Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02605 ATGTCAGCAGAGGAAATCTTGTCATCCAACGAAGAACAATATGATATATCTCAGCCTCCATTTCGTAACAAAAGTGGCTATAATTCAAGGATAGGCATCTATCACTCTCTAGTTAAGCTTCAAACTAAGCATGAAATCCCAACAAAGCCAGACCTCAACACTGCCCATTTTGTGCTCTCACAGTTCCCACAAGCACACCTTGCTGTGGCAAAAACTGCATTCGTTGATGCAAGAACTAATCTGAGAGTTAGCTATAGTGAGCTGAGAAGGTCTGCCTACTCCCTTGCATCAGCTTTGTTCCATGGACTTGAGGTTAGGAGAGGTGATGTGGTTTTTTTATTGTCACCAAACTCAACCTTGTACTCAGCCATATGTCTAGCTGTGTTATCCGTTGGAGCAGTTCTGACCACTGCCAACCCCATCAACACAGCATCAGAAATTTCGAAACAAGTGCGTGATTCAGGTGCTAAACTAGCCATCTCAACACCAGAGGAGCTGCACAAATTGGTCCCAACTGGGGTTCCTACAATTCTCACTTCTCGTTCTTCTGATGGCAGAATGTTATCCGTTGAAGAGTTAATAGAAGGTTGTTATGATTCAACCGAGTTGCCGCAAGTTCCTGTGGCACAGTCAGACACTGCTGCTATATTTTACTCTTCAGGGACGACGGGAGTAAGCAAAGGTGTGGTTTTAACTCATGCAAATCTCATTTCCATAATGAGATTGATGTTCTGGTCTGCTGATGTCAGTGGATCCCAAGATGATATTTTCTTGGCCTTCATTCCAATGTTTCACATCTATGGATTTGTATTCTTTGGATTAGGATTGTTGTGTGTCGGTATAACAACAGTTTTGATGCAGAAGTTTGACTTCCAAGATATGCTTGATGCAATCCAGAAGCACAAGGTTAACAACGTGCCAGCAGTGCCACCAGTGATCCTTGCGCTAGTGAAGCATTCAAGGAAAGCTAGGTGTGACTTGTCCAGCCTAAGAAGAATGGGGACAGGTGCTGCACCTTTGAGCAAGGAAGTGGCACTGGAGTTCAGGAAAATGTTTCCATGGGTTGAACTAAGGCAAGGTTATGGACTAACAGAAAGTAGTGGTGGAGCAACATTTTTTGTCTCAGATAAAGATGCCAAAGCTCATCCAGATTCATGTGGGAAGCTGATTCCAACATTTTCTGCAAAAGTTATAGACACTGAAACGGGGAAGCCTTTGCCCCCTAACAAAGAAGGAGAGTTGTGGTTAAAAAGTCCTACTATCATGAAAGAATATCTGGGAAATTTGGAGGCAACAAGTTCAACAATTGATTCAGAAGGTTGGTTGAGAACTGGTGATCTTAGTTACATTGATGATAATGGATTTGTTCACATAGTTGAACGGATAAAAGAGCTAATCAAGCACAATGGATATCAGGTGGCTCCTGCAGAACTGGAGTCTGTGCTGCTAAGTCACCCTCTTATAGCCGATGCAGCAGTTATACCGTTGGAAGATGAAGAAACTGGACAGATACCAATGGCATATGTGGTGAGAGCAGCTGGTTCTGAACTCTCAGAAGGCCAAATCATTGAATTTGTAGCAGGCCAGGTGGCTCCATATAAGAAAGTGAGAAAGGTGAGTTTCATTGACACTATTCCAAAGTCAGCTGCTGGCAAGATATTGCGGAAGGATCTTGTTTCACAAAGCAAATTTCAACCTGTCTCCAAGCTATGA 1713 0.4308 MSAEEILSSNEEQYDISQPPFRNKSGYNSRIGIYHSLVKLQTKHEIPTKPDLNTAHFVLSQFPQAHLAVAKTAFVDARTNLRVSYSELRRSAYSLASALFHGLEVRRGDVVFLLSPNSTLYSAICLAVLSVGAVLTTANPINTASEISKQVRDSGAKLAISTPEELHKLVPTGVPTILTSRSSDGRMLSVEELIEGCYDSTELPQVPVAQSDTAAIFYSSGTTGVSKGVVLTHANLISIMRLMFWSADVSGSQDDIFLAFIPMFHIYGFVFFGLGLLCVGITTVLMQKFDFQDMLDAIQKHKVNNVPAVPPVILALVKHSRKARCDLSSLRRMGTGAAPLSKEVALEFRKMFPWVELRQGYGLTESSGGATFFVSDKDAKAHPDSCGKLIPTFSAKVIDTETGKPLPPNKEGELWLKSPTIMKEYLGNLEATSSTIDSEGWLRTGDLSYIDDNGFVHIVERIKELIKHNGYQVAPAELESVLLSHPLIADAAVIPLEDEETGQIPMAYVVRAAGSELSEGQIIEFVAGQVAPYKKVRKVSFIDTIPKSAAGKILRKDLVSQSKFQPVSKL 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02605 570 CDD 4CL 46 558 - -
Vimu3g02605 570 MobiDBLite consensus disorder prediction 1 21 - -
Vimu3g02605 570 SUPERFAMILY Acetyl-CoA synthetase-like 70 560 - -
Vimu3g02605 570 Gene3D - 464 565 IPR045851 -
Vimu3g02605 570 Pfam AMP-binding enzyme C-terminal domain 477 552 IPR025110 -
Vimu3g02605 570 ProSitePatterns Putative AMP-binding domain signature. 216 227 IPR020845 -
Vimu3g02605 570 Pfam AMP-binding enzyme 70 467 IPR000873 -
Vimu3g02605 570 FunFam Long-chain-fatty-acid--CoA ligase FadD 43 463 - -
Vimu3g02605 570 Gene3D - 40 463 IPR042099 -
Vimu3g02605 570 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 44 560 - -
Vimu3g02605 570 FunFam 4-coumarate--CoA ligase 2 464 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02605 Vimu-Chr3 40228836 40230778 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02605 70 559 Monolignol Biosynthesis Gene Families AT1G20500 47.094 1.24e-155 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02605 K10526 - gmx:100783104 986.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02605 3 40228836 40230778 Vimu3g02605 3 40228836 40230778 ECH