Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02603 CTAATCCCCAATTATCTTTCACTCTTTTTCTCTCTCAGCGATTCATCTCTCTTGAATCCAATCCAATCCATGGCACCTATGGGTCCCGGCTTCCGATTCCACCCCACCGACGAAGAGCTGGTGGTGTTCTACCTGAAGCGCAAGATCACCGGAAACCTCTCCCGGTACGACCACATCGCAGTGGTTGATGTCTACAAGCTCGAGCCCTGGGACCTTCCCCCTCTGTCCAAGCTCAAGACCAAGGACTTGGAATGGTACTTCTTCAGCGTGCTGGACCGCAAGTATGGAAATGGCTCCAGGACCAACCGCGCCACCGAGAAGGGCTACTGGAAGACCACTGGAAAGGACCGCCCTGTGGCCCATGGCGACCGCACCGTGGGGATGAAGAAGACCCTCGTGTACCACATCGGTCGAGCCCCACATGGCCGTCGCACCAATTGGGTCATGCACGAGTACAAGATGCTCGATGAAGAATTGACTCGTGCTGGCACAGTGCTGGATGTGTATGTGGTATGTAGGATTTTCGAGAAGAGTGGTGCTGGACCAAAGAATGGGGCCAAGTATGGTGCTCCCTTGGACGAGAAGGAGTGGGATGTGGATGAGGAGAATGAGCAGAAGGAGGTGGTTCCCGTGCCTGCGACTGCTCATCGTGGGGTGGCTCCCTTGACGGAGATTAGTCCTAACGTGGTTGCTCCTCCTTTGCCCGCGACAGCTGCAGTGGCTCCTCCTGTGGTAGCAACTGATGGTGACTCTTGCGATGGTATTGGGGTGGCTATCCCTTCGGTAGCAACTGATGCTGATTTTTGGGATGATATTGGGGCCTTTTTGGAAACTAACGACCTTGACGGGGAACTTGATTTGAGTGATATGATTGGGGCTGTTACTTTTCCATCATTGAACTTTCATCACGGGGAGTGTAGTACCTATGCTGAAAATTCCCAAGAACTCATCAAGGATCAGGAGCCATTGGCGGGCACCTTTGGAATTTCTGGGCCTGAAAATGGCCAGCCTCTTGATATGGCTGAGCAACATGACATGGGCACAGGTTCAGTGAAAGATGAAGACAATGGTGAGCAGAGCGAAATTGTGAATCTTCTCAATTTCAATGACGCATCGGATAATATGGATCTGGATCTATATTTTGATGCCACCCAGAATCTTCCGACGGCTGATGATGAATCATTCTTGGAAACCAATGATCTTGCAATTGGGAATGAGGGTGATCTCATTGAGGCTGATCCTTCTGCCAATGATATTATGCTAGACAAGTATCTTGCACTCCCTGATGATGATGATGATGATATTTGCAAATATATATCTTTCGATTATTCTCAGGTTCCAGAGAGTGAAAACTCTAATTCCAACCAAGGATCACCTTTAACCCAGCAGACTGTGGGGGGAGAAACCTCAAATAAAGCTGTGGTTGGTAAACATGATTCTGAAGCACAAACCAGCAATGAGGCTTTTTCTGTGCAGAATACAGAGGAGGCAAAGTTAGCAGCACCAGGAAATACAAATCCATTTGTTAAGCAGGCCTATGGATGGTTAGCTAGCATCCCTGCTTCACCTGCACATGCTTTTGAGTTTCCACCGAAGGACATTACTCTTGGGATTGATGGTGCAGCTCAGTCTTCCCATCCAGCTCATATAACTACAGGTATGATCAGCATAACAGACATTACATTTAGAGGCAATGCGATGGATTGGCCCATGGGCAAAATAGGAGGATTTAACACTGCAATGTCTACTGAGTTTTCTCGACCGGACGTTAATTGTGCTGCCTTGATACCTGTTTCTGGCAAGACCGCATTTGTATTGTCACATGGCTGGATATTTTTGACGGGTTTCTCGGTTCTTATTCTTTCACTTAGTTTCAAGATTGGAAGCATCATGTATACTGGATCTCGTGACTTTGTAGATTTGTTTATGGTACCTTATAGTCGAACTGATCTATGCATTCTTCGTGGTAACTTATTCTCAGAGTTCCATCAGATAGAGTAA 2001 0.4768 LIPNYLSLFFSLSDSSLLNPIQSMAPMGPGFRFHPTDEELVVFYLKRKITGNLSRYDHIAVVDVYKLEPWDLPPLSKLKTKDLEWYFFSVLDRKYGNGSRTNRATEKGYWKTTGKDRPVAHGDRTVGMKKTLVYHIGRAPHGRRTNWVMHEYKMLDEELTRAGTVLDVYVVCRIFEKSGAGPKNGAKYGAPLDEKEWDVDEENEQKEVVPVPATAHRGVAPLTEISPNVVAPPLPATAAVAPPVVATDGDSCDGIGVAIPSVATDADFWDDIGAFLETNDLDGELDLSDMIGAVTFPSLNFHHGECSTYAENSQELIKDQEPLAGTFGISGPENGQPLDMAEQHDMGTGSVKDEDNGEQSEIVNLLNFNDASDNMDLDLYFDATQNLPTADDESFLETNDLAIGNEGDLIEADPSANDIMLDKYLALPDDDDDDICKYISFDYSQVPESENSNSNQGSPLTQQTVGGETSNKAVVGKHDSEAQTSNEAFSVQNTEEAKLAAPGNTNPFVKQAYGWLASIPASPAHAFEFPPKDITLGIDGAAQSSHPAHITTGMISITDITFRGNAMDWPMGKIGGFNTAMSTEFSRPDVNCAALIPVSGKTAFVLSHGWIFLTGFSVLILSLSFKIGSIMYTGSRDFVDLFMVPYSRTDLCILRGNLFSEFHQIE 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02603 666 MobiDBLite consensus disorder prediction 446 470 - -
Vimu3g02603 666 ProSiteProfiles NAC domain profile. 27 177 IPR003441 GO:0003677|GO:0006355
Vimu3g02603 666 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 27 286 - -
Vimu3g02603 666 Gene3D NAC domain 36 180 IPR036093 GO:0003677|GO:0006355
Vimu3g02603 666 Pfam No apical meristem (NAM) protein 29 153 IPR003441 GO:0003677|GO:0006355
Vimu3g02603 666 FunFam Nac domain-containing protein 86 36 180 - -
Vimu3g02603 666 SUPERFAMILY NAC domain 20 177 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02603 Vimu-Chr3 40205439 40208643 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02603 23 631 NAC Transcription Factor Family AT5G04410 35.417 4.25e-104 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu3g02603 NAM 7.6e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02603 - - vun:114191703 1103.97