Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02600 ATGGGTCGCGAAACTGTGTTCCTTCCAGCCCCACCAACCACTACCACCACTATAGTGAATCCAGTGGCAGCACCAACTGCACCGCCTACCTCTCTTGCTCCTGGTTTCAGGTTTCACCCAACTGACGAGGAACTTGTTATCTATTACCTCAAGCGCAAGGTTTCTGGTAAAAGCTTCCGATTTGATGCTATATCTGAAGTGGACATATACAGGAGCGAGCCCTGGGACCTAGCAGATAAATCAAGGTTGAAGACAAGGGACCAGGAGTGGTATTTCTTTAGTGCATTGGACAAGAAGTATGGAAATGGTGGGAGGATGAACAGGGCTACCAACAAAGGGTATTGGAAAGCCACTGGGAATGATCGGCCAGTGAAGCATGATCAAAGGACTGTGGGGTTGAAGAAAACTTTGGTGTTTCACAGTGGCCGAGCTCCTGATGGGAAGAGGACTAATTGGGTCATGCATGAGTACAGGCTTGATGCGTATGTTTTGTGTAGAGTGTTTCACAAAAATAACATAGGACCTCCAAATGGGCAACGATATGCACCCTTTGTTGAAGAAGAGTGGGATGATGCATCTGGAATGGTTCCAGGGGCAGAGCCTGTGCATAATGGCTCTATCGCCCATCAGCCACGTGTTGAAGGCAACAATGGTGTTTTATGTGCTGAAGGGAGAAATGGTGTTCTACAGGTTAGTTCGCTCCTAGTTTTTTGGGTGTCTATTATGTTACTAATGATTAATTTGTTTGGATTTATGCTAGAATAA 765 0.4601 MGRETVFLPAPPTTTTTIVNPVAAPTAPPTSLAPGFRFHPTDEELVIYYLKRKVSGKSFRFDAISEVDIYRSEPWDLADKSRLKTRDQEWYFFSALDKKYGNGGRMNRATNKGYWKATGNDRPVKHDQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLDAYVLCRVFHKNNIGPPNGQRYAPFVEEEWDDASGMVPGAEPVHNGSIAHQPRVEGNNGVLCAEGRNGVLQVSSLLVFWVSIMLLMINLFGFMLE 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02600 254 SUPERFAMILY NAC domain 26 171 IPR036093 GO:0003677|GO:0006355
Vimu3g02600 254 ProSiteProfiles NAC domain profile. 32 174 IPR003441 GO:0003677|GO:0006355
Vimu3g02600 254 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 31 183 - -
Vimu3g02600 254 Pfam No apical meristem (NAM) protein 34 159 IPR003441 GO:0003677|GO:0006355
Vimu3g02600 254 Gene3D NAC domain 41 173 IPR036093 GO:0003677|GO:0006355
Vimu3g02600 254 FunFam Nac domain-containing protein 86 41 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02600 Vimu-Chr3 40189798 40191095 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02600 1 248 NAC Transcription Factor Family AT3G10480 52.881 2.36e-97 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu3g02600 NAM 7.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02600 - - gmx:100808783 408.297