Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02593 ATGGAAGCACCAGAGGAACTCTCTCTGGGGGGGTCCAAAGATCACGCCAACATTGTTAAGGGGAAAAGAACCAAAAGGGTCAGACCACAATCCCCTATCCCCTTCTCTGTCACCGCCAATTCCTCCACCGGAGAAGGAGAAAGAGAAGATTGCTGCAATGTTGATGACAACACCAACACCAACAACAAAAATTATGATATTAATAACAACATCATCGTCAACAACATCAACAACTCTCCCACCACTTCCTCTGCAGGATTACAAGACAGCACGGATGAAGAGGAGGACATGGCCAATTGCCTCATCCTTCTCGCACAAGGACAATCTCGGGAATCTCCAAAACATGTCGAGGAAGATGTGGGAATGAACTACGCCAAGTACAGCAGTAGGAAATTCTTGGAGGCTGCTACCTTGGGGTCTAGCAGGGCAGGGTACTATGTTTATGAATGCAAGACATGTAACAGAACTTTCCCTTCTTTTCAAGCACTCGGAGGCCACAGGGCCAGTCACAAGAAGCCTAAGGCAATCCTGCCCATTGCCCAAGACAAGAAGCACCAACACCTTTTGTCATCGGATGAGGACGACTTTCAATTAAAGCCCAACAACAAATCACCATTTTCCCTTCAACTCGGTACAAAGGCCAATTTGTACAACAAATCCAAGGTGCACGAGTGCTCCATCTGTGGTGCTGAATTCACATCGGGGCAAGCACTGGGAGGCCACATGAGACGCCACCGCGCACCGGTTGGGATCCCCACCACACTCTCCTTCACCCCATTGGCTCTGGAACCGGAAGAAGATCACCCCAGAAAGAAAAGGAATGTCTTGAACTTGGAATTGGATCTCAATCTTCCCGCCCCAGAAGATGATCAAAGAGAATCCAAGTTTTCCTTTGCATCCAAGCAACAACAACAACAACATGGACAGAAACAGCAACAGCAGCAACAACAACAACCACCACAAACAAGTCTTGTCTTAACTGCCCCAGCTTTGGTGGATTGTCATTACTGA 1011 0.4787 MEAPEELSLGGSKDHANIVKGKRTKRVRPQSPIPFSVTANSSTGEGEREDCCNVDDNTNTNNKNYDINNNIIVNNINNSPTTSSAGLQDSTDEEEDMANCLILLAQGQSRESPKHVEEDVGMNYAKYSSRKFLEAATLGSSRAGYYVYECKTCNRTFPSFQALGGHRASHKKPKAILPIAQDKKHQHLLSSDEDDFQLKPNNKSPFSLQLGTKANLYNKSKVHECSICGAEFTSGQALGGHMRRHRAPVGIPTTLSFTPLALEPEEDHPRKKRNVLNLELDLNLPAPEDDQRESKFSFASKQQQQQHGQKQQQQQQQQPPQTSLVLTAPALVDCHY 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02593 336 ProSiteProfiles Zinc finger C2H2 type domain profile. 223 245 IPR013087 -
Vimu3g02593 336 MobiDBLite consensus disorder prediction 1 49 - -
Vimu3g02593 336 MobiDBLite consensus disorder prediction 297 324 - -
Vimu3g02593 336 SMART c2h2final6 148 170 IPR013087 -
Vimu3g02593 336 SMART c2h2final6 223 245 IPR013087 -
Vimu3g02593 336 SUPERFAMILY beta-beta-alpha zinc fingers 147 245 IPR036236 -
Vimu3g02593 336 ProSitePatterns Zinc finger C2H2 type domain signature. 150 170 IPR013087 -
Vimu3g02593 336 PANTHER ZINC FINGER PROTEIN ZAT5 81 308 - -
Vimu3g02593 336 Pfam C2H2-type zinc finger 222 248 - -
Vimu3g02593 336 Pfam C2H2-type zinc finger 147 173 - -
Vimu3g02593 336 MobiDBLite consensus disorder prediction 282 324 - -
Vimu3g02593 336 MobiDBLite consensus disorder prediction 31 47 - -
Vimu3g02593 336 ProSiteProfiles Zinc finger C2H2 type domain profile. 148 175 IPR013087 -
Vimu3g02593 336 Gene3D Classic Zinc Finger 146 245 - -
Vimu3g02593 336 ProSitePatterns Zinc finger C2H2 type domain signature. 225 245 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02593 Vimu-Chr3 40145337 40147821 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02593 1 336 C2H2 Transcription Factor Family AT5G04390 44.652 3.83e-83 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu3g02593 zf-C2H2_6 6.6e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02593 - - gmx:100799383 501.901