Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02586 ATGTTTTCTAGGTTGATACATCCCCATGAAGGGGGTGTTGGGCAGGAAGACATGCAGGGTGCTTCCAATCATGCTCACCTCGGAGACCCTTGTCTTGTTCTCACCTCTGATCCCAAACCTCGTCTTCGGTGGACCGCTGACCTTCACGAACGCTTTGTTGACGCTGTCACTCAACTTGGGGGTGCCAGTAGTGAATGTTGGGATTCGTGCAAAGGTTTTATTTGTTGTTCATGGAGGCCAGTGTTAGGTAGCAGGGAAAGGAGGGGCCTTTCTTATCTGAGTTGTAGTGGTATATGTTGGAATTGCAGATATCACGTCAAATGGCCGAAGCAACAACTTGTAGGATCTATTGAGATGTGGCAAACCACATCAAATAGGCCTCAAGCCACTCCTAAAGCGATCATGAGAACCATGAATGTCAAGGGTTTGACGCTCTATCATTTAAAAAGTCATCTTCAGAAGTATAGGCTTGGTAAGCAATCAGGAAAAGATTCTGATGAGGGATGCAAAGATGGTTCGTATCTTCAAGAAAGTCCTGGTACTGACAACTCATCTCCAAAGTTACCAACTTCTGATGCAAACGAGGGTCATGAAGTGAAGGAGGCATTAAGAGCACAAATGGAAGTGCAAAGTAAACTACACTTACTAGTGGAGGCTGAGAAGCACTTGCAAATTCGCCAGGATGCAGAGCGGAGGTACATGGGCATGCTTGAGCGAGCATGTAAGATGTTAGCCGATCAATTTATTGGGGACATAATTATGGACACAGATGGCCAAAAATTTCAAGGGCTGGAAAGTAAAACACCCAGAAGTTCCCTAGTTGATAACGTTGGGTTTTTCCCCCCAGTATGTTCTGAGGTAGGTGGAATGCATGTTTCAGAAGTACCACCTATTCTCCAGCCTCAAGGGGCTGACTGTTCCACTGAAAGTTGCCTGACATCACTTGAGAGTTTAGGAGGATTGACGCTCGAAGGATCTCCCGGCGGATCGAAGAAGAGGATGCTGAGCTTGGATTCAATGGTAGCACCTTTGATCTGGAGTGAAGCCAACACCAGAACTCAAGGAATCCATTTAGCTCAAGTCAATCCTCCAGGAATAACTAGATTCTTATCTGCTCTTGTCCATCAAGTTGGTGATAATCAACTTGCTCACATGTCATTGTGTAAATTGAAAATACCATGTGCCTTAACTTAG 1194 0.4531 MFSRLIHPHEGGVGQEDMQGASNHAHLGDPCLVLTSDPKPRLRWTADLHERFVDAVTQLGGASSECWDSCKGFICCSWRPVLGSRERRGLSYLSCSGICWNCRYHVKWPKQQLVGSIEMWQTTSNRPQATPKAIMRTMNVKGLTLYHLKSHLQKYRLGKQSGKDSDEGCKDGSYLQESPGTDNSSPKLPTSDANEGHEVKEALRAQMEVQSKLHLLVEAEKHLQIRQDAERRYMGMLERACKMLADQFIGDIIMDTDGQKFQGLESKTPRSSLVDNVGFFPPVCSEVGGMHVSEVPPILQPQGADCSTESCLTSLESLGGLTLEGSPGGSKKRMLSLDSMVAPLIWSEANTRTQGIHLAQVNPPGITRFLSALVHQVGDNQLAHMSLCKLKIPCALT 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02586 397 MobiDBLite consensus disorder prediction 158 194 - -
Vimu3g02586 397 Gene3D - 38 160 - -
Vimu3g02586 397 MobiDBLite consensus disorder prediction 176 191 - -
Vimu3g02586 397 NCBIfam myb-like DNA-binding domain, SHAQKYF class 128 158 IPR006447 GO:0003677
Vimu3g02586 397 SUPERFAMILY Homeodomain-like 125 159 IPR009057 -
Vimu3g02586 397 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 9 270 IPR044848 GO:0003700
Vimu3g02586 397 Pfam MYB-CC type transfactor, LHEQLE motif 198 243 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02586 Vimu-Chr3 40081042 40084068 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02586 128 315 G2-like Transcription Factor Family AT3G24120 42.079 4.54e-36 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02586 - - vum:124825518 440.654