Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02577 ATGGGGTGTCTCTTGCTGCTTCTATGTTTTTCTAGCTTTTTATATGCTGTTTCTGCCTTAAACTCTGATGGGTTGGCTTTATTGTCCCTCTCTCGGGACTGGACTGTTGGGTCTGGTGACATAAACTCCACATGGAAGTTGTCAGATTCCACTCCATGCTCGTGGGCGGGAGTGCATTGTGATAGTGCCAATAATGTGAATTCTCTAAACCTCAGTAGATCTTCTATTTTTGGCCAATTAGGACCTGAAATTGGACGTTTGATTCACTTGCAGTCCATAGACTTATCATATAATGATATGTTTGGAAATATTCCCCCAGAATTAAACAACTGTACCATGCTCGAGTACATGGACCTTACTGTAAACAATTTTAGTGGAGGAATACCAGAGAGCTTTAGAAACTTGCAAGATTTGAAGTATGTGGATCTCTCACTTAATCTGCTGAGTGGTGAAATTCCTAAATTCTTGTGGGAATATCCTCTCCTGGAAGAAGTATATCTCAGTTACAACAGTTTAAGTGGTTCCATTCCCTCAAGTATTGGGAATATGACCAACCTTGTCACACTTGATCTTTCTTATAATCCGCTGTCAGGGACTATTCCCATGTCCATTGGAAATTGTAGTAAATTAGAAAATCTGTATTTGTTAGGTAATGCATTGCAGGGTGTTATTCCGGAGAGTTTAAATAATCTCGAAAATCTTCTTGAGTTATTTCTAGATCGTAATAGTCTTGGAGGTACTATTCAACTGGGATCTAGAAATTGTAAAAAGTTGTCTATTCTGTCTCTTTCTCGCAATAACTTCAGTAGGGGTATACCATCAAGCTTGGGGAATTGTAGTGGTCTGATAAAGTTTTATGCTACAGCCAGTAACTTAGTTGGCAGTATACCGTCAACCTTAGGACTCCTTACAAACCTTTCTATTCTTGCGATTCCAGAGAACAGTTTGTCAGGGAAAATACCTCCACAGATTGGTAATTGCAAATCACTGGATATGTTGTATTTGAATTCCAATGAACTCGAAGGAGAAATTCCTAGTGAATTGGGAAACTTGAGTATATTACGCGAACTTCGGTTGTTTGAAAACCATTTGACAGGAAAAATTCCACTTGGCATTTGGAAAATTCCAACACTTGAGCAGGTACACGTATACATTAACAACCTTTCAGGTGAGCTACCTCTGGAGATGGCAGAGCTTAAACATCTTAAGAATATCTCCTTCTTTGAAAATCATTTCTCTGGAGTCATTCCTCAAAGCTTAGGAATCAATAGCAGTTTGGTTGTGTTAGACGTCACGGATAATAATTTCACCGGTCCCATCCCACCAAATGTTTGCTTTGGAAAGCAATTGGTCAGGTTGAATATGGCTAAAAATAAATTTTATGGCAGCATACCACCTGATCTTGGAAGATGCACAACTCTTGCAAGGCTGAGACTCGAAGGAAACAATTTCTATGGGGCGCTTCCTGATTTTGAAACTAATCCAAATCTCCTTCATATGAGCATCAACAACAACAAAATCAGTGGGGAAATTCCATCAAGTTTTGGAAACTTCACAAATCTCTCTCTTTTAGATTTATCCGTGAACAGCTTGACAGGTCTTGTACCCTCGGAGCTGGGAAACCTTGTGAATCTCCGGATTTTGGTTCTTTCTCACAATACTTTTAAAGGTCCTTTGCCACATCAACTGTCAAACTGTAACAAAATGATCAAGTTTGATGTTGGATTCAATTTCTTGAATGGTTCATTTCCATCAAATTTTCGGAACTGGACTGAATTAAATACTTTAATTCTCTCAGAGAATAATTTTGATGGTGGTATTCCAGCATTCTTGTCAGAATTTGAAAGGCTAAATGATTTACAACTTGGAGGAAACATGTTTGGAGGAAGCATTCCTAGATCAATTGGAGAACTGGTGGATTTGATGTATGTTCTAAATCTAAGTGCTAATGGGCTGATAGGTGAGCTTCCTAGGGAGATCGAGAACCTGAAGAATCTGATAAAACTGGATCTATCTTGGAACAATTTGACAGGAAGTATACAAGTTCTCGATGAGCTCAGTTCATTATCTGAGTTCAACGTTTCATATAATTCTTTTGAAGGTCGTGTTCCACTACGGCTAACAAGTTTTACAAATTCCTCTCGGTCGTTTTTCGGAAATCCTGGCCTATGTATCTCAAATTTCCCTGAAAACAGCTATTTGAGGCCATGTGATACAAATTCAATAACGTCAAAAAGGCTCAGTAAAGTTGCAATTGCATTGATAGCACTTGGATCCTCAATATCTGTTGTTCTGTTGCTGGGGTTAATTTATATATTCATTATCAGAAAAATTAAGCAGGAAGCCACAACCAATGAAGAAGATAGTTCTCCAACCCTTCTCAATATGGTTATGGAAGCTACAGAAAATCTAAATGATCAGTATATTATTGGCAGAGGAGCTCAAGGAGTTGTCTATAAAGCAGCACTTGGTCCAGACAATATTTTGGCTATAAAGAAGTTTGTATTTGCTAGTGATGAAGGGAAGAGCTCAAGCATGACCAGAGAAATTCAAACCCTTGGAAATATTAGGCATCGAAATTTGGCCAAAATGGAAGGCTGCTGGTTGAGAGAAAACTACGGTCTAATTGCATACAAATACATGCCAAATGGAAGTCTGCACGATGCTTTGCATGAGAAGAAGGGATCACACTCCTTAGAGTGGAATATCCGGAATAAGATAGCTGTTGGAATTGCTCATGGATTGGCTTATCTCCATCATGACTGTGATCCCGTCATAGTGCACAGAGATATCAAAACGACTAACATACTTCTAGATTCTGAGATGGAGCCTCGTATTGCAGATTTTGGTATTGCAAAGCTTTTGGATCAGCCTTCTACCTCCACACAGTCAATATATGTCACTGGTACACTTGGTTATATACCACCAGAAAATGCTTATACAACAAGAATGGGTAAAGAGTCCGATGTATACAGTTATGGTGTAGTATTGCTGGAGCTGATATCCAGAAAGAAGGCATTGGATCCATCATTTGTAGAAGGAACAGATATAGTTACTTGGGCTAGATCTGCCTGGGAGGAAGCAGGAGATGTGAATGAAATTGTTGATCCAGAGTTGGCTGGTGAAATTTCAAATTCTGAAGTGATGAAACAAGTTAAAAAGGTTCTTTTAGTGGCTTTGAGATGTACATTAAAGGATCCACGCAGCAGACCAACGATGAGGGATGTTATCAAGCATTTGTATGCAGATGTTAAAAACTCCACTTAG 3267 0.389 MGCLLLLLCFSSFLYAVSALNSDGLALLSLSRDWTVGSGDINSTWKLSDSTPCSWAGVHCDSANNVNSLNLSRSSIFGQLGPEIGRLIHLQSIDLSYNDMFGNIPPELNNCTMLEYMDLTVNNFSGGIPESFRNLQDLKYVDLSLNLLSGEIPKFLWEYPLLEEVYLSYNSLSGSIPSSIGNMTNLVTLDLSYNPLSGTIPMSIGNCSKLENLYLLGNALQGVIPESLNNLENLLELFLDRNSLGGTIQLGSRNCKKLSILSLSRNNFSRGIPSSLGNCSGLIKFYATASNLVGSIPSTLGLLTNLSILAIPENSLSGKIPPQIGNCKSLDMLYLNSNELEGEIPSELGNLSILRELRLFENHLTGKIPLGIWKIPTLEQVHVYINNLSGELPLEMAELKHLKNISFFENHFSGVIPQSLGINSSLVVLDVTDNNFTGPIPPNVCFGKQLVRLNMAKNKFYGSIPPDLGRCTTLARLRLEGNNFYGALPDFETNPNLLHMSINNNKISGEIPSSFGNFTNLSLLDLSVNSLTGLVPSELGNLVNLRILVLSHNTFKGPLPHQLSNCNKMIKFDVGFNFLNGSFPSNFRNWTELNTLILSENNFDGGIPAFLSEFERLNDLQLGGNMFGGSIPRSIGELVDLMYVLNLSANGLIGELPREIENLKNLIKLDLSWNNLTGSIQVLDELSSLSEFNVSYNSFEGRVPLRLTSFTNSSRSFFGNPGLCISNFPENSYLRPCDTNSITSKRLSKVAIALIALGSSISVVLLLGLIYIFIIRKIKQEATTNEEDSSPTLLNMVMEATENLNDQYIIGRGAQGVVYKAALGPDNILAIKKFVFASDEGKSSSMTREIQTLGNIRHRNLAKMEGCWLRENYGLIAYKYMPNGSLHDALHEKKGSHSLEWNIRNKIAVGIAHGLAYLHHDCDPVIVHRDIKTTNILLDSEMEPRIADFGIAKLLDQPSTSTQSIYVTGTLGYIPPENAYTTRMGKESDVYSYGVVLLELISRKKALDPSFVEGTDIVTWARSAWEEAGDVNEIVDPELAGEISNSEVMKQVKKVLLVALRCTLKDPRSRPTMRDVIKHLYADVKNST 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02577 1088 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 63 155 - -
Vimu3g02577 1088 SUPERFAMILY RNI-like 92 461 - -
Vimu3g02577 1088 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 179 308 - -
Vimu3g02577 1088 Gene3D Phosphorylase Kinase; domain 1 773 880 - -
Vimu3g02577 1088 Pfam Protein kinase domain 808 1081 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02577 1088 Gene3D Ribonuclease Inhibitor 303 453 IPR032675 -
Vimu3g02577 1088 FunFam Leucine-rich receptor-like protein kinase family protein 321 418 - -
Vimu3g02577 1088 ProSiteProfiles Leucine-rich repeat profile. 665 687 IPR001611 GO:0005515
Vimu3g02577 1088 SUPERFAMILY L domain-like 449 709 - -
Vimu3g02577 1088 Pfam Leucine rich repeat 495 553 IPR001611 GO:0005515
Vimu3g02577 1088 Pfam Leucine rich repeat 161 220 IPR001611 GO:0005515
Vimu3g02577 1088 Pfam Leucine rich repeat N-terminal domain 21 61 IPR013210 -
Vimu3g02577 1088 SUPERFAMILY Protein kinase-like (PK-like) 792 1081 IPR011009 -
Vimu3g02577 1088 Gene3D Transferase(Phosphotransferase) domain 1 881 1087 - -
Vimu3g02577 1088 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 771 880 - -
Vimu3g02577 1088 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 19 178 - -
Vimu3g02577 1088 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 448 733 - -
Vimu3g02577 1088 FunFam Serine/threonine-protein kinase-like protein CCR4 881 1088 - -
Vimu3g02577 1088 SMART LRR_typ_2 256 279 IPR003591 -
Vimu3g02577 1088 SMART LRR_typ_2 542 566 IPR003591 -
Vimu3g02577 1088 SMART LRR_typ_2 183 207 IPR003591 -
Vimu3g02577 1088 SMART LRR_typ_2 87 111 IPR003591 -
Vimu3g02577 1088 SMART LRR_typ_2 663 690 IPR003591 -
Vimu3g02577 1088 SMART LRR_typ_2 231 255 IPR003591 -
Vimu3g02577 1088 SMART LRR_typ_2 518 541 IPR003591 -
Vimu3g02577 1088 Gene3D Ribonuclease Inhibitor 454 744 IPR032675 -
Vimu3g02577 1088 Gene3D Ribonuclease Inhibitor 20 300 IPR032675 -
Vimu3g02577 1088 ProSiteProfiles Protein kinase domain profile. 804 1082 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02577 1088 ProSitePatterns Serine/Threonine protein kinases active-site signature. 926 938 IPR008271 GO:0004672|GO:0006468
Vimu3g02577 1088 SMART serkin_6 804 1082 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02577 Vimu-Chr3 40019259 40022643 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02577 11 1086 Receptor kinase-like Gene Family AT1G73080 49.909 0.0 976
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu3g02577 Pkinase 4.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02577 - - gmx:100817655 1662.51