Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02573 ATGAACAACGGCACAACCACCAAGGGCTATGGTTTTAACTCAGATGGGTTCAGATATGGATTAGCTTTTGTAATTGGGTCGCTGGTATTACTTATCACGGTGACTTTTGCATGTGTGCGCCTTCGCATGGCTCGAGGTCCCAACATGCTCAATATTTTGGCTGGAATTCCACCATCTCATCCCACAAGAGATGAAGACTCAGCTGAACAAGGCTTTGATCACATTGATACAAGCTTTGAAAGCTATCCGAAACTTTTATACTCCCAAGTAGAGAAGGGTTCAACTTCAACCAATATCCCTTCTTCTAGCTGCTCCATCTGCTTAGCTGACTACAAAGAGGGTGACATGTTGAGGTTACTTCCTCCCTGTCACCATATTTTCCACCTTGCTTGTGTTGATCCATGGCTTAGTTCAGAGGAGTCTGTGCTATTGCTAGTGAGCTTTATTATTCTGACTCTTATCGTCACACTTGCAGCTTATTTGTGCTCTACTGATATTCCACGTACTACTCCTTCTGTTCCTGCAGCTGTGACACACTCCAACCACACCACAATCACTGTGGAGGCACCTGAGCCATGCATAGATCAGAGTGTCTGCAACTTTCCAAATCTCCAATTTTCCAAAACCAAATTGTGTGGTAGCACTAGCAGTAGCTCTTCAAGCTGTTCCATATGCTTGATGGATTACAAAGACCGTGATTCCTTGAGAGTGTTGCCTGCCTGTGGTCACTTTTTCCATGTCAAGTGTGTTGATCCTTGGTTGAGAATCAATATGACCTGCCCAGTTTGTAGGACCCCAATAACCCTCTCAGATGTAACCAAAACTTTTTAG 831 0.4416 MNNGTTTKGYGFNSDGFRYGLAFVIGSLVLLITVTFACVRLRMARGPNMLNILAGIPPSHPTRDEDSAEQGFDHIDTSFESYPKLLYSQVEKGSTSTNIPSSSCSICLADYKEGDMLRLLPPCHHIFHLACVDPWLSSEESVLLLVSFIILTLIVTLAAYLCSTDIPRTTPSVPAAVTHSNHTTITVEAPEPCIDQSVCNFPNLQFSKTKLCGSTSSSSSSCSICLMDYKDRDSLRVLPACGHFFHVKCVDPWLRINMTCPVCRTPITLSDVTKTF 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02573 276 ProSiteProfiles Zinc finger RING-type profile. 104 135 IPR001841 -
Vimu3g02573 276 Pfam RING-like zinc finger 104 132 IPR001841 -
Vimu3g02573 276 SMART ring_2 222 263 IPR001841 -
Vimu3g02573 276 SMART ring_2 104 165 IPR001841 -
Vimu3g02573 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 272 IPR013083 -
Vimu3g02573 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 142 IPR013083 -
Vimu3g02573 276 SUPERFAMILY RING/U-box 103 140 - -
Vimu3g02573 276 ProSiteProfiles Zinc finger RING-type profile. 222 264 IPR001841 -
Vimu3g02573 276 Pfam Ring finger domain 221 264 IPR001841 -
Vimu3g02573 276 SUPERFAMILY RING/U-box 215 270 - -
Vimu3g02573 276 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 145 268 IPR045899 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02573 Vimu-Chr3 40000540 40002404 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02573 195 265 C3H Transcription Factor Family AT5G06490 51.351 4.76e-20 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02573 - - vra:106770594 443.351