Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02572 ATGGGGTGGGAAGAAGAAGAAGAAGAACCTGGAGGCAGTGTAACTGGAAGAAAAGGAGAAGTGGCGTTGGCGAAAAGAGGTGGCGATGATAGCTTGAACTTGAAGTTGGAAGCTATGATTCATTATAGTGTGAATAATAATTCCGTTGCAAAAGCTCGAACAAAGAATGAAAGGTGTGAAAGGAAAATTTCTGAAGAAGCTCAAATCGATCAAGCCAATCGGGTATCTCAAGCAAGATCGAATTCTCCAACTGAAAGCCTCGGATGGATTCCGAGTTTCAATTTGCACGCCCCATTCGTTTTCCGGGAAAACAAGCCGGAGAAAACTGTTCAGAGCTGCGAGGAAGTCAAAATGCAGGAGGAACCCGAGGTCATAGACGTGGCAGAGCTGATGAAAGACCTTGAAGAAGAAGAAATGGATTTGGAAGATTACAATGACAACAAAGAGAACATAGGTCCATGTTCCCTGAAACCCCAGCAACTCAACAAGGGTGTTTTGCAGAGTGGGAACAGAGCAAAAGCAGAGTCAAAACAGAGAGGGGTTTTGGAGGATAAAAAGTCTTCACCGGCTAGAATTGATAGTAACAGCAACAGAAAAACCAAAACCCCTTTGTTAGATTCTGACATTTCATCGTTCCGGAGACCAGACTTGAACTCTGGCAGCCTATTTGATCCGAATCTGCTGGCGGCGTTCGAGCAAGCCGTGAAGGAACATGCTAGAATGACAGAAGAGCAGAGGAGAGTCCGAGTTGAAGAAGAATCTTCACAGAAACTGGAAGATGACGATCCTGACACTGACCCTAACCCTTTGATGCTCTTTGAAGAGAAGTGTCCACCGGGGGGAGATGGCACTGTGATTTTCTACACCACAACGCTTAGGGGAATCCGGAAGACATTCGAAGACTGCAACAAAGTTCGCTTTTTACTTCAGAGTTTTAAGGTTTTGTATTTTGAGAGGGACATATCAATGCACAAGGAATTCAGGGATGAGTTGTGGTGCAGTTTAGATGGGAAGTTAGTGCCTCCAAGGCTTTTTGTCAAGGGGAGGTACATTGGTGGGGCAGAAGAAGTTCTTAGTTTGCATGAGCAAGGAAAGTTGAAGAAAATCTTAGAAGGGGTTCCAATGGATTACTCCAATGGCCCTTGTGAAGCGTGTGGAGGGATAAGGTTTGTGCTGTGCTTCAAGTGCAATGGTAGCCACAAGGTCTTGGAGGAAAATGGAGAGAGCAATCAGTGCTCTCAGTGTAATGAGAACGGGTTGATTGCACTGGCATGGCCTGTTTGTGCTGGTTCTTGGACCAATCTTAAAGTCCTTAGAATCTCAGATTCATTCGATGAGAAATTCTACAACCTAATTCAGGTATCACAACAAGAGTACGAGCATTGCACATCACTTGAGCCTCTAAGGATATTCAATAGTAGCCCAGTAATTCTTCCACTGAAGGAGAAAGGTGTGTTGTTCTTCACATGCAGCATCTCAAACTACTGTTGTCTAGGCCAGAAGATTGCAATTTCTGTTCATGAAAGTTCTTCACAAAAACCCCCATCACCATCACCATCACCTTCACCCTCTCAAGTGCCAATCATAATCTCTCCTCCACAACTATCACCAAATGGGTCTGCTCCTCAACCTCATGGATCTAGTGGCATGATTAGCCCTCCACCTTCTACTGGAAACACTTCAGGAGGCAATGCTGGGAACCCACCTGTGCCAACTTCCACTCAAGATGATGCGAATAATGCAATGGCCTTGGCAGGTGGGAGAAGTTTCACTCTGTCTCTGGGGCAAGTCTTATCTATTCTTGGTGCTTTCTTTGGCTTTTGGGTGATGTAG 1833 0.4512 MGWEEEEEEPGGSVTGRKGEVALAKRGGDDSLNLKLEAMIHYSVNNNSVAKARTKNERCERKISEEAQIDQANRVSQARSNSPTESLGWIPSFNLHAPFVFRENKPEKTVQSCEEVKMQEEPEVIDVAELMKDLEEEEMDLEDYNDNKENIGPCSLKPQQLNKGVLQSGNRAKAESKQRGVLEDKKSSPARIDSNSNRKTKTPLLDSDISSFRRPDLNSGSLFDPNLLAAFEQAVKEHARMTEEQRRVRVEEESSQKLEDDDPDTDPNPLMLFEEKCPPGGDGTVIFYTTTLRGIRKTFEDCNKVRFLLQSFKVLYFERDISMHKEFRDELWCSLDGKLVPPRLFVKGRYIGGAEEVLSLHEQGKLKKILEGVPMDYSNGPCEACGGIRFVLCFKCNGSHKVLEENGESNQCSQCNENGLIALAWPVCAGSWTNLKVLRISDSFDEKFYNLIQVSQQEYEHCTSLEPLRIFNSSPVILPLKEKGVLFFTCSISNYCCLGQKIAISVHESSSQKPPSPSPSPSPSQVPIIISPPQLSPNGSAPQPHGSSGMISPPPSTGNTSGGNAGNPPVPTSTQDDANNAMALAGGRSFTLSLGQVLSILGAFFGFWVM 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02572 610 SUPERFAMILY Thioredoxin-like 278 371 IPR036249 -
Vimu3g02572 610 MobiDBLite consensus disorder prediction 241 264 - -
Vimu3g02572 610 CDD GRX_GRX_like 285 421 - -
Vimu3g02572 610 PANTHER GLUTAREDOXIN DOMAIN-CONTAINING CYSTEINE-RICH PROTEIN CG12206-RELATED 107 422 - -
Vimu3g02572 610 Coils Coil 127 151 - -
Vimu3g02572 610 MobiDBLite consensus disorder prediction 193 211 - -
Vimu3g02572 610 SUPERFAMILY Cupredoxins 430 507 IPR008972 -
Vimu3g02572 610 Pfam Plastocyanin-like domain 432 500 IPR003245 GO:0009055
Vimu3g02572 610 MobiDBLite consensus disorder prediction 145 211 - -
Vimu3g02572 610 MobiDBLite consensus disorder prediction 176 192 - -
Vimu3g02572 610 MobiDBLite consensus disorder prediction 241 268 - -
Vimu3g02572 610 MobiDBLite consensus disorder prediction 514 530 - -
Vimu3g02572 610 ProSiteProfiles Glutaredoxin domain profile. 273 377 - -
Vimu3g02572 610 MobiDBLite consensus disorder prediction 152 174 - -
Vimu3g02572 610 MobiDBLite consensus disorder prediction 508 578 - -
Vimu3g02572 610 ProSiteProfiles Phytocyanin domain profile. 413 508 IPR003245 GO:0009055
Vimu3g02572 610 Gene3D - 428 517 IPR008972 -
Vimu3g02572 610 MobiDBLite consensus disorder prediction 1 23 - -
Vimu3g02572 610 Pfam Glutaredoxin 286 351 IPR002109 -
Vimu3g02572 610 MobiDBLite consensus disorder prediction 531 578 - -
Vimu3g02572 610 Coils Coil 241 261 - -
Vimu3g02572 610 Gene3D Glutaredoxin 283 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02572 Vimu-Chr3 39995766 39999951 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02572 432 566 Phytocyanin Superfamily AT4G28365 30.070 3.58e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02572 K17479 - gmx:100802583 549.28