Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02559 ATGGCCACAGAAGAAGAAATTTCAACTCTGAAACTGATGCGCCAATATCTCTTGGGAGATATTTCAGACCCGTTTCTCACCAACCTCATCCCTGTAAAAGTTGAAGAGTCCTCATCAGAACTTGATTTGGATTCAAACTCTTCAGAACAAAGCAACTGCTGCAGGTTTCTAGAATACTTTAATTTTGAAGTAGACAAAGAACTGACAGATCTCACTTCTCATCATAATATCCAAAACTCCATTGCTACAAGTCCACTCAAGAATTCTGATATGGCAGATCCAATTGTGCCAGTGAAAAAGAAAGTAACATGTTGTTATGAGGCAAGGCGTTACAGAGGAGTGAGGAGAAGACCATGGGGGAAGTTTGCTGCAGAAATCCGTGACCCCAAAAGGAAAGGTAGCAGGGTGTGGCTAGGTACGTATGACAGTGAAATTGATGCTGCTAAAGCTTATGATTGTGCTGCCTTCAGAATGAGGGGTCAGAAGGCTGTATTGAATTTCCCTTTGGAGGCTGGAAGGTCTCATCCAGAACCCAACACTTCTGGCAGGAAGAGAAGAAGAGACTGCACTGCAACTGTCACAACTTCAACTCGTGTATGTCAGGAAAAATAA 612 0.4281 MATEEEISTLKLMRQYLLGDISDPFLTNLIPVKVEESSSELDLDSNSSEQSNCCRFLEYFNFEVDKELTDLTSHHNIQNSIATSPLKNSDMADPIVPVKKKVTCCYEARRYRGVRRRPWGKFAAEIRDPKRKGSRVWLGTYDSEIDAAKAYDCAAFRMRGQKAVLNFPLEAGRSHPEPNTSGRKRRRDCTATVTTSTRVCQEK 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02559 203 MobiDBLite consensus disorder prediction 170 189 - -
Vimu3g02559 203 SUPERFAMILY DNA-binding domain 110 170 IPR016177 GO:0003677
Vimu3g02559 203 Gene3D AP2/ERF domain 109 170 IPR036955 GO:0003700|GO:0006355
Vimu3g02559 203 SMART rav1_2 110 174 IPR001471 GO:0003700|GO:0006355
Vimu3g02559 203 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Vimu3g02559 203 PRINTS Ethylene responsive element binding protein signature 150 170 IPR001471 GO:0003700|GO:0006355
Vimu3g02559 203 ProSiteProfiles AP2/ERF domain profile. 110 168 IPR001471 GO:0003700|GO:0006355
Vimu3g02559 203 PANTHER DNA-BINDING DOMAIN 73 177 IPR044808 GO:0003700|GO:0009873
Vimu3g02559 203 FunFam Ethylene-responsive transcription factor 2 109 170 - -
Vimu3g02559 203 CDD AP2 118 168 IPR001471 GO:0003700|GO:0006355
Vimu3g02559 203 Pfam AP2 domain 110 160 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02559 Vimu-Chr3 39902902 39903513 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02559 107 187 AP2-EREBP Transcription Factor Family AT5G07580 72.840 2.83e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu3g02559 AP2 4.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02559 - - pvu:PHAVU_007G135900g 336.265