Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02557 GCTTGCTCGGTGGAAGAAGCGAACGTTTTATCATTCTCACACATACCAGCTATGGATCTTGAAGAAGTGGTAAAGGATGAGGACAGTGAAGATGAAATTAATGAGGGCGCTCGAGAGATTGAAGATAGAAGATTATGTTTTGAGGAATCATTAATTGAGAAAATTGATATGCAGAGACTTGAGCTTCTTGGTCTTTCTGAGAATCAGAAGCGTGTGCTGATAGATGGCCATGTGAATTGGGCATATGAAGCTTTCACAAAATATCATTGTGCTGAGCTTGTCCATTCCACCCCATTAAACTGGACATGGAGAATGCTTATGATAAAACTATATGATTATGGTCTTCTAAAGCCAAGCACTATGATTACATGCTATGCTATTCTCAAACAATACAGGGAACAGAAATAA 408 0.3873 ACSVEEANVLSFSHIPAMDLEEVVKDEDSEDEINEGAREIEDRRLCFEESLIEKIDMQRLELLGLSENQKRVLIDGHVNWAYEAFTKYHCAELVHSTPLNWTWRMLMIKLYDYGLLKPSTMITCYAILKQYREQK 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02557 135 CDD VEFS-box_EMF2-like 18 131 - -
Vimu3g02557 135 PANTHER POLYCOMB GROUP PROTEIN 17 133 - -
Vimu3g02557 135 Pfam VEFS-Box of polycomb protein 17 126 IPR019135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02557 Vimu-Chr3 39882723 39884864 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02557 18 128 C2H2 Transcription Factor Family AT2G35670 35.135 5.13e-17 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02557 - - var:108342442 164.851