Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02556 ATGTTAGATCTTAATGAGACTCCTTCAGAAGAAATGCAAGGTGCAGCTTCTGAAAGATATTCAAGAAGCAGAAATCAACCAGACGCTGAATATATCTGGACCAATTTATCAGAAGAGCAGAAGCTTGTTGCATCAAACAGTTTCAATGTTTATATCGAGCCTGTAGTAATCTACAACGAAATCCAGTCTCGCCCAAGATTCCTTCAGAGATGCTTGTACCACAACAGAAAGGCTAAGCACAAGAAGAGGATTCTAATGACAGTTTTGCTGTCGTGGAAAGTAGAAGAAATTCAATCTCTTTTTCCTATGTGTATCTGTCTGGGAAGGCTGTTGGATCCAAACGAGGAACACACAGGGGAAGAAAAGTATCATGTTAGTAGGATATTCACATTTGAAGGTCCAACTGGAATTGATTGGGATGGAATTAATCATGTCCGAGTAAACTTTATGCTTCCTCAAATAGAAAAGTTAGCTGTGGAAACTAATTATGACAAATATTTTCTCTTCATTCTCGCTTCTGCGAAAAATCCTATTTCATTGTCTAAAGTCAATGCAAGCACGTTGACTTCGGAGGTAGCTTCTAATGAATCATCTGGTGGAGAGAAATGCGTTTATGGAAAAGTATCTCTGAAATTTCTTTATAAGATTTTGAATATATCTCCAAATTCCCCTTTGCAATATCGAACTGAGATTCAATTTAGCACTGAACTTCGTTCTTGTAATTTGAAGTATTGGTTGCAATATTATACTCGAACAAAGAGCAACATCATCTCCATTAGAGATTCCAATGATGATTCAGAGGTAGAGGCTATGTCAAAGAAACTTGAAATCTCAACTGGTTTTGAAGAATTTGGAGCAGCTATGGAAGCAGCTTCTGGTAGGATACAGGAGAGGAGAGAAGAGTCATCTTTGTCTTCTTCGTTACCTCATTTCACTTGGTCACCAGGAATTGTCTCATTTTATTACAGGTATGATATCTTAGCTTCTTTGTATTACCATAACATGTTGCACAGGCTCGAAGAAGTTTTGATTGCAGTTACTGAGAATTTCACCTGTGCAATCTGTTTGGTACAATGTATAAACTATAAGAGTTTAAAATTCCACCTAAGGTCATCGCACCAGATATTTAGGTTTGAATTTTCTGAATCAGAGGAATTTCCATCCGTATCTGTGTCTGTGAAGAACGAAAACTGGTGGCGAGAGTTGATTGATCCAAAAGTTGATACTTTTATTTACTGTATCAAAAAACCAAAGAGCAGAAAGCCGAAAACTTCATCTCATGGAAGAAATGATACAGATCCGGTGGTGCTAGACGTCGAACTACGTATTGGTGGTATTGTTGCGAATCCTCGGCTAATGGAGAACATGGATATTTCCCTATCAAAATATGTTTCTGATGATGGATCAAATGCTATACAACAAGACCAGCCCGAAGAGGTTTCAAATAATGTAGTGTTAGAAGTTGGACAGGAGCACGTTTCAAATGAAGTATCAGATCCATCTCAGTGTCGTGTCTCATCGGTGTCTGATCATGATGAGACACGTGGAGTGCAGGAAGTTGATCATGATGAGACACATGGAGTGCAGAAAGTTGATAATGAAGAGATTTCAAATGCAATTGTGGTGTATACTGGTGAAGATTGTGTCCCTACAATTTCTGAACATGATAATGGGACACTTGTTGTGCTAGAAGACGATGTTTCGAATGCAACTATTTTGCATACTAATGAGGATCATGTCTCTCCAGTTTTCAAGCATGATAATGGGGTAGATGCTGTGCAACAAGATGCTGTGCAACAAGATGTTGTGCAACAAGATGCTGTGCAACAAGATGCTGAACAACAAGATGTTGTGCAACAAGATCCTGTGCAACAAGATGTTGTGCAACAAGATGCTGAACAACAAGATGAGGTTTCAAATGCAATAACTTTACATCCTAGTCCGGATTTTGTTCCATTTGTACCCACGAATGAAGGTACAAGTTCAGTGCAACAAGCAGAGGAGAAAGAGAAGTTACTAAGTGAATGCTATGACCCAGATATGCTTGCTCGGTGGAAGAAGCGAACTTTTTATCATTCTCACACATACCAGGCTATGGATCTTGAAGAAGTGGCGAAGGATGAAGACAGTGAGGATGAAATTAATGAGGGCGCTCGAGAGATTGAAGAAAGAAGATTATGTTTTGAGGAATCATTAATTGAGAAAATTGATATGCAGAGACTTGAGCTTCTTGATCTTACTGAGAATGAGAAGCGGTTCGTAACTATGTGGAACTCATTTGTTAAGAAACATCGTGTGCTGGTAGATGGCCATGTGAATTGGGCATATGAAGCTTTCACAAAATATCATTGTGCTGAGCTTGTCCATTCCACCCCATTAAACTGGACATGGAGAATGTTTATGATAAAACTATATGATTATGGTCTTCTAAAGCCAAACACTATGATTACATGCTATGCTATTCTCAAACAATACAGGGAACAGAAATAA 2490 0.3859 MLDLNETPSEEMQGAASERYSRSRNQPDAEYIWTNLSEEQKLVASNSFNVYIEPVVIYNEIQSRPRFLQRCLYHNRKAKHKKRILMTVLLSWKVEEIQSLFPMCICLGRLLDPNEEHTGEEKYHVSRIFTFEGPTGIDWDGINHVRVNFMLPQIEKLAVETNYDKYFLFILASAKNPISLSKVNASTLTSEVASNESSGGEKCVYGKVSLKFLYKILNISPNSPLQYRTEIQFSTELRSCNLKYWLQYYTRTKSNIISIRDSNDDSEVEAMSKKLEISTGFEEFGAAMEAASGRIQERREESSLSSSLPHFTWSPGIVSFYYRYDILASLYYHNMLHRLEEVLIAVTENFTCAICLVQCINYKSLKFHLRSSHQIFRFEFSESEEFPSVSVSVKNENWWRELIDPKVDTFIYCIKKPKSRKPKTSSHGRNDTDPVVLDVELRIGGIVANPRLMENMDISLSKYVSDDGSNAIQQDQPEEVSNNVVLEVGQEHVSNEVSDPSQCRVSSVSDHDETRGVQEVDHDETHGVQKVDNEEISNAIVVYTGEDCVPTISEHDNGTLVVLEDDVSNATILHTNEDHVSPVFKHDNGVDAVQQDAVQQDVVQQDAVQQDAEQQDVVQQDPVQQDVVQQDAEQQDEVSNAITLHPSPDFVPFVPTNEGTSSVQQAEEKEKLLSECYDPDMLARWKKRTFYHSHTYQAMDLEEVAKDEDSEDEINEGAREIEERRLCFEESLIEKIDMQRLELLDLTENEKRFVTMWNSFVKKHRVLVDGHVNWAYEAFTKYHCAELVHSTPLNWTWRMFMIKLYDYGLLKPNTMITCYAILKQYREQK 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02556 829 CDD VEFS-box_EMF2-like 685 825 - -
Vimu3g02556 829 PANTHER POLYCOMB GROUP PROTEIN 35 827 - -
Vimu3g02556 829 MobiDBLite consensus disorder prediction 493 526 - -
Vimu3g02556 829 MobiDBLite consensus disorder prediction 506 526 - -
Vimu3g02556 829 Pfam VEFS-Box of polycomb protein 678 820 IPR019135 -
Vimu3g02556 829 MobiDBLite consensus disorder prediction 1 23 - -
Vimu3g02556 829 ProSitePatterns Zinc finger C2H2 type domain signature. 352 373 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02556 Vimu-Chr3 39861527 39879316 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02556 648 824 C2H2 Transcription Factor Family AT5G51230 39.548 8.09e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02556 - - vun:114192453 1011.13