Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02555 ATGCATAGGTCTGCAAGCTGGAACAGGTTTTCTGATGACTACTTCAAACATGCGACGAGTGGTTCCTCTTCAGGACACAGATCATCGTATTCTATGTTCGATGGAAGCCATTTGCCAACTTATGATCCCATTGCAGACTTGGCAAAGAAAGAGAGGGCACGTGTCAAACTTGCAGAAAGTGCAGTTCATCTCATCCCTTTTGTTCTAATTGCTTGTGCCCTCATTCTTTGGCTCTTCTCAAATCCAGGCAAAACCGAAACCTTTCCAGATTTAGGTGAACACTGTCAACACAACGATTGCCACCAACTCAATTTTCTTCCTTTCACATGCCAATGTTGCCAAAAGGTTTTTTGTTTGGAGCACAAATCCTTCAAGTCTCACGCATGCAAGAATTCCGACCACAACAGTAGAAAAGTGGTTGTCTGTGAAACGTGTTCCATGTCCATTGAAACCACCTGTTATGTGGAACAGGAAGAGGAGACAATCTTGGAGAAGCACCTAAAGTCTGGGAACTGTGATCCCACCAAGAAGAAGAAACTCATTTGCCATGTCAAGTATATGTGCAGAGGAAAAAGACAATCGTCGAATTCTCAACGGATATGGTATATCCATGCAGGAGGGCTTGGAGATCCCCTTGGAGGAAGAATTGAAGGATTAAGTCTTGAAGGAGAAATTGAAAGCGATAGCGATGGAACTCAAATGGGTTTCTTACCTATTGTGAGTGCAGAAGAAGCTTCCACCAAAGATTTTGGTGCTGGAAAAGATTTAATAAATCCAAAGAATCTTTAG 789 0.4259 MHRSASWNRFSDDYFKHATSGSSSGHRSSYSMFDGSHLPTYDPIADLAKKERARVKLAESAVHLIPFVLIACALILWLFSNPGKTETFPDLGEHCQHNDCHQLNFLPFTCQCCQKVFCLEHKSFKSHACKNSDHNSRKVVVCETCSMSIETTCYVEQEEETILEKHLKSGNCDPTKKKKLICHVKYMCRGKRQSSNSQRIWYIHAGGLGDPLGGRIEGLSLEGEIESDSDGTQMGFLPIVSAEEASTKDFGAGKDLINPKNL 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02555 262 Pfam AN1-like Zinc finger 95 132 IPR000058 GO:0008270
Vimu3g02555 262 Gene3D - 80 145 IPR035896 -
Vimu3g02555 262 ProSiteProfiles Zinc finger AN1-type profile. 89 137 IPR000058 GO:0008270
Vimu3g02555 262 PANTHER TRANSMEMBRANE PROTEIN 1 86 - -
Vimu3g02555 262 SUPERFAMILY AN1-like Zinc finger 87 138 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02555 Vimu-Chr3 39854586 39858401 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02555 83 185 C2H2 Transcription Factor Family AT3G28210 63.107 8.83e-40 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02555 - - gmx:100500384 181.415