Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02553 ATGTTATTGCAAAGGCAGATTGATCTGGTCAATGGCTCAACCGAAAGAGCCACAATTTTCACTGCTGAGGAGCTCAAGAAAGCCACCAACAACTACGATGATGATAGAATCATAGGCAAAGGAGGACATGGAACGGTGTACAAAGGTATATTATCAAATGGCAGTGTTGTTGCCATCAAGAAGGCCATGGTTTCCAACCAAACCGAGATTGACCAATTCATCAACGAAGTGGTCGTGCTTTCCCAAATCAACCATAGGAACGTTGCCAAGCTACTAGGTTGCTGTTTGGAGACTGAGTTTCCTTTGCTTGTTTATGAGTTCATCACCAACGGTACCCTTTGTGAGCATCTACATTTTGAAGATGAGGCATGTGGTGATAAATACAAACTTTCATGTTTGAGAATTCTTCTGTTTCCACACCAATCATACATAGAGATGTTAAAACAGCAAATATTCTTCTAG 462 0.4113 MLLQRQIDLVNGSTERATIFTAEELKKATNNYDDDRIIGKGGHGTVYKGILSNGSVVAIKKAMVSNQTEIDQFINEVVVLSQINHRNVAKLLGCCLETEFPLLVYEFITNGTLCEHLHFEDEACGDKYKLSCLRILLFPHQSYIEMLKQQIFF 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02553 153 Pfam Protein tyrosine and serine/threonine kinase 36 122 IPR001245 GO:0004672|GO:0006468
Vimu3g02553 153 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 1 121 IPR045274 GO:0007166
Vimu3g02553 153 Gene3D Phosphorylase Kinase; domain 1 3 107 - -
Vimu3g02553 153 FunFam Wall-associated receptor kinase 2 2 107 - -
Vimu3g02553 153 SUPERFAMILY Protein kinase-like (PK-like) 15 122 IPR011009 -
Vimu3g02553 153 SMART serkin_6 32 153 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02553 153 ProSiteProfiles Protein kinase domain profile. 32 153 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02553 153 ProSitePatterns Protein kinases ATP-binding region signature. 38 61 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02553 Vimu-Chr3 39849616 39850077 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02553 1 120 Receptor kinase-like Gene Family AT1G17910 57.500 5.66e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vimu3g02553 PK_Tyr_Ser-Thr 6.3e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02553 - - var:108341450 252.677