Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02552 TACCTTGACCCTGAATACTTCCAAACAAGCCAAATAACCGAGAAGAGTGATGTTTACAGCTTTGGTGTTGTTCTTGCAGAACTGTTGACAAGTAAGAAGGCATTTTCGTTCTTTAGGCCTCAGAGTCATAGAAATTTGTCCATGTATTTTGTTTCTGCAATGAATGAGGGTCGGTTGGATCAAATATTGGACAAGGAAATTGTGAGTGATGTTGAGTATGTGATAGAAGTTGCTAATCTAGCCAAAAGGTGTCTTAGGGTTGCATGGAGAAGAAAGACCAAGCATGAAAGAAGTTGTTATGGAGTTGGAGGGAATAAGGATCATTGA 327 0.3945 YLDPEYFQTSQITEKSDVYSFGVVLAELLTSKKAFSFFRPQSHRNLSMYFVSAMNEGRLDQILDKEIVSDVEYVIEVANLAKRCLRVAWRRKTKHERSCYGVGGNKDH 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02552 108 Pfam Protein tyrosine and serine/threonine kinase 2 34 IPR001245 GO:0004672|GO:0006468
Vimu3g02552 108 ProSiteProfiles Protein kinase domain profile. 1 108 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02552 108 SUPERFAMILY Protein kinase-like (PK-like) 1 89 IPR011009 -
Vimu3g02552 108 Gene3D Transferase(Phosphotransferase) domain 1 1 98 - -
Vimu3g02552 108 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 1 88 IPR045274 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02552 Vimu-Chr3 39848974 39849562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02552 1 92 Receptor kinase-like Gene Family AT1G79680 51.064 2.09e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vimu3g02552 PK_Tyr_Ser-Thr 1.4e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02552 - - var:108341450 163.31