Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02549 CTGTTTAAAGGGGTGAGGCAGAGACACTGGGGGAAATGGGTTGCTGAGATTAGATTACCAAGAAACAGAACAAGGGTTTGGCTAGGGACTTTTGACACAGCTGAAGATGCTGCCATTGCATATGACACGGCAGCATACATACTGAGAGGAGAATATGCACAGTTGAACTTCCCAGATCTCAAGCATGTAATCCAGGCCAATTCTCTGAATGGAACCACTGCAGCACTTGTGGAGGCAAAACTACAAGCAATATCTCAAGGTGTTTCTTCTCACAGGAAGCCTACTGACTCACCAGCAGGCTTAAGCAACAAGCACACTGATGAGAATGGCAAATTGAAAAGTACAAATGACAAGAATTCAACCATGAAAGAGTGGCAGTTTGATAATACTGAGAAAAGCAAAAGTATACACCATGAGATATCAGATGTGGAAACTGTTCAGTTAAGTAGAATGCCCTCCTTAGACATGGACACCATTTGGGATGAACTTTTGGTCTCTAATTCATGA 507 0.428 MFKGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAEDAAIAYDTAAYILRGEYAQLNFPDLKHVIQANSLNGTTAALVEAKLQAISQGVSSHRKPTDSPAGLSNKHTDENGKLKSTNDKNSTMKEWQFDNTEKSKSIHHEISDVETVQLSRMPSLDMDTIWDELLVSNS 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02549 168 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 2 163 - -
Vimu3g02549 168 Pfam AP2 domain 2 50 IPR001471 GO:0003700|GO:0006355
Vimu3g02549 168 CDD AP2 2 60 IPR001471 GO:0003700|GO:0006355
Vimu3g02549 168 MobiDBLite consensus disorder prediction 86 104 - -
Vimu3g02549 168 PRINTS Ethylene responsive element binding protein signature 2 13 IPR001471 GO:0003700|GO:0006355
Vimu3g02549 168 PRINTS Ethylene responsive element binding protein signature 24 40 IPR001471 GO:0003700|GO:0006355
Vimu3g02549 168 SMART rav1_2 1 64 IPR001471 GO:0003700|GO:0006355
Vimu3g02549 168 MobiDBLite consensus disorder prediction 106 138 - -
Vimu3g02549 168 SUPERFAMILY DNA-binding domain 2 59 IPR016177 GO:0003677
Vimu3g02549 168 FunFam Ethylene-responsive transcription factor 2 1 59 - -
Vimu3g02549 168 ProSiteProfiles AP2/ERF domain profile. 1 58 IPR001471 GO:0003700|GO:0006355
Vimu3g02549 168 Gene3D AP2/ERF domain 1 59 IPR036955 GO:0003700|GO:0006355
Vimu3g02549 168 MobiDBLite consensus disorder prediction 86 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02549 Vimu-Chr3 39840158 39844988 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02549 1 168 AP2-EREBP Transcription Factor Family AT4G13620 54.438 2.43e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu3g02549 AP2 6.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02549 - - gmx:100819431 271.552