Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02542 ATGTTTTGTTTTGAAAAGCCTTGTTTGGATGCTCTGTCCAATCTATATCCTTACTGTGCCATTTTAAGCAAATGTAATTGTTCTCCGACATCTTCGTCGGAAACTCCGACCCTCATGGAACTTTTTCCTCTTCCTCTCTCTCATTCTCTCCTCTCACAAACAAACTTTCTCTTTCCTCCCTACAAAAACCAAGCTTCAACTTCCATTTTTCTCTTTTGGGTTGCTCTAACCGTACCCCCAAAACCTTGCATTGCCATTGCAACAATCTCCAAACCTCATTTTCCACTGCACGAGCAAGCAAAAAGGGTTGAAACTTTTGAGTTCCTTCGTGGAACTGAGGTGCGGGTTCCTTTCCAGGAGCATGTTTACGAGAAATATTATGTGATCATGGAGAAACCACCATCACTGGTTAAACGTGGCAAACAATATATAGATGCGGTGAATTATGGTTTAGGCAACCAAATCTCTTCTGCCGGGGATGGACATGACATATGTTACCAAACGGGTGAAGAGTTTTCTGCGGAGTTCTTACGTGATCGAGTTGCCTTAAGAAGAATTCCTGTCATAGCTGACACAGACATGCGTCTGCCAAACAGATTGGATGTTAATATTAATGATAATAATTGTCAGTTGGTTTATGAGGATCTAAAGCATGCTCTCGGGCTAAGGAGAGCAGATTCAGATGGTAACTCGGATTTGTCAGAGTTTGCATTTGCCAGAGGATGTGTTGGTGAAGTTGACAACAGGACCTATCCTAATAATTTGAACAGATACCAGTTTGAACAAGGTGGTATCAGACAAGTATCAGGTACATTTTCTAAACAACTATCAGGTAACTTTTCGGAGGGAAGTGGTGTTGATCAAGTTAATTCGGGACCAAATACTTCACCTATGTACGTTGACTCACCTCATTCATACCATCCTTATGCATCAGTATTCACAGAAGGTTCGTTCTACAAGAAGATAAAGTTTCTTTGTAGCTTTGGAGGTAGAATACTACCAAGACCAAATGATGGGAAGCTCAGATATGTGGGTGGAGAGACACGGATAATATCAATTAGGAAGAGCATCGCATGGGAAGAACTTATGAGGAAGACTTCTGCTATCTGCAGTCAAAGTCACACTATCAAGTACCAGCTTCCTGGAGAGGACCTTGATGCTCTTATATCTGTTTGTTCCAACGAGGATCTTCATCATATGATTGAGGAGTATGAAGAACTTGAAAGAGCTGGAGCCTCTCAACGGCTGAGGATTTTTCTCATCCCTTTAAATGAATGTGAGAGTTCAAGTTCCAATGAAGCAATAGTCAATCAGCAAAGTGATGCGGATTATCATTATGTTGTTGCTGTTAACAGTATGCTGGATCCAAGTCCACAACAGAGTTCAAGTGGGCGAAGTTTAGCAAGCCATACAAGCCAGTTTGGAAATACCATTGATTACAGCAGTCCACATTTTCACAGAGACTCATCCACATCTGCATTTGCTTCAGAGATAAAAGACTTGACCCCAACCTCTCCAAATTTTGCAGGCCTACTCTCAAAACCCAGTCCTCAATATTTTACGACCCTAGCTGGCCAGACATTCAACCAAATGTCTCCTTTACCCGTTGTTTGTGATCCCCAAAATTCTAATGGACAGCTATTTATGGATAAACCATATAATGCTATGAATGAAAGCATTACTCCCTTTGTTACGGAAAAAGTTCCACATGACAATACTCTGTATGTAGACAATGGCAATTATGTTGATCCAGTTGCATACTATAACAATCTTGCTCAAGGGCATAGACGCGTGAATTACCATCCTAATAATCAATATATAAGGGAGTCTGACCAGATCAGGAGGCCTCGTGAGAATCTTCATCTTCACAGACATAACAGAAGCAACGATTTTGTCTCTTCTGCAACATGTAATCTAAATATTCCGAGTTATGAGAGACCTTTAATTACCAGTGATGGTTCATATCATTTTAACAATATTGTCTCTCATCCTCCCGAGTCTCCAAGTTTATTGTCAGAATCTGATCCTAGAGAGGGTTCTCGGTACACAATGTTGCATGTACACTCTGACTCAATACTTAATGAGAATGATGAGAACAGTAAGGCCCACTTGCTATTTCCCCGCAATGTAGAGAGAGACAATTTTCCATCACGAAAAAATTCAAGTCATTTAGAAGAATATTCATTACAGCCTGGAGAGATAATTGATAGGAAAGAGCACCTGGCTAAGTATCAAAATTTGCCCATTTTTGGAATGACTGATAACTATAAGAAAGTATTAGATATTGGTAAAGAGAATTTGCAACATGCACAAAAGAACAATGATTTCTTTGGAGAAACGAACAATGGCATAGATTTTAAACATTTACAGCACATCTACACTCCACATGGTGTTTGTTCATCTTCTCCAGATTTACAGAGAAGTGAATGCAATGCATCTACTGAGTCATTTGTCTCTCTCGAATCCCCAATAAACCTGAGGGGGCAAACAAGTGTGGTACAATTAGACAGAGCCACTTCTGAGCTTTCCATGAGGAGCCGAAATTCATCAAAAATGCATCACCAATATCCTATGTCTGTGGCAAAAGACAGTCAACCACTTTACCCTGGCCCTTTTAAGTCCCAAAATGACAAAGAATCCTCATTACCTATCTCATATATGGACATGATTTCTTCCCAAAGAGAGGTTGCTGTCCCTGTCGGAGATCCTGCGTACTACCTGCACCAGAAGGAAGAAAACACAATCATTGAGAATCGATCTTCTGAAAATATCAGTGAATTCTGTGTCAACAGGCCAGTGTCTGATTCCAAGGGACCTAAAGATTCTATTTCTTCGGGTATCCAATCATGCTTAAAAGTTGTCTCGAATGTAGATGAAAAGGTTGAAGTTGAACCTACATCTCCTAAAAAGGAAGGGATAGAATGTGATAGTCCAGAATCTGAAAGTAAGCATGCAAGGCCTGATAGTGGAAACATCAACAAGTCTACTGGTGATAGAGAAACTGCTGAAGTAGAGTCTGAAATTTATGGATTACAGAATATTGAAAATGATGATCTTGAAGAAATGCAAGAGTTGGGATCTGGAACCTTTGGAACTGTTTATCATGGAAAGTGGAGGGGAACAGATGTTGCAATTAAGAGAATAAAAAGCAGCTGTTTCTCGGGTAGATTGTCAGAGCAAGAGCGGTTGATTAAGGATTTTTGGAGGGAGGCACAGATTCTGTCAACTCTTCACCATCCAAATGTGGTAGCGTTTTATGGGGTAGTTCCAAATGGCCCTGGTGGAACACTGGCAACAGTAACAGAATACATGGTGCATGGATCACTCAAGAGTGTTCTCATGAAGAGGGAAAAAGTGCTTGACCGTCGTAAAAGGGTCCTGATAGCAATGGATGCAGCCTTTGGAATGGAATATTTGCACTTGAAAAATATTGTTCATTTTGATTTAAAGTGTGATAATTTACTTGTCAATCTGGGCGATCCTGAACGACCTGTATGCAAGGTTGGAGATTTTGGCCTATCCAGAATAAAACGTAATACACTTGTTTCAGGTGGTGTCCGAGGAACCCTTCCATGGATGGCACCTGAATTACTGGATGGTAACAGTTGTAGGGTATCTGAGAAGGTTGATATTTTCTCATTTGGCATTGTAATGTGGGAAATCTTGACTGGGGAAGAACCATATGCTAACATGCACTGTGGCGCTATTATAGGAGGTATTGTCAATAATACGCTCAGGCCTTCTATTCCAAAAAGATGTGATTCTGAGTGGAAAAAGCTGATGGAAGAGTGCTGGAGTCCTGATCCTGCAGCAAGACCAACCTTCACAGATATTAAAATTAGACTTCGCAACATATCAGCTGCACTTCCCAAAAAGAGACATAACATTGGCAATCGATGA 3900 0.4059 MFCFEKPCLDALSNLYPYCAILSKCNCSPTSSSETPTLMELFPLPLSHSLLSQTNFLFPPYKNQASTSIFLFWVALTVPPKPCIAIATISKPHFPLHEQAKRVETFEFLRGTEVRVPFQEHVYEKYYVIMEKPPSLVKRGKQYIDAVNYGLGNQISSAGDGHDICYQTGEEFSAEFLRDRVALRRIPVIADTDMRLPNRLDVNINDNNCQLVYEDLKHALGLRRADSDGNSDLSEFAFARGCVGEVDNRTYPNNLNRYQFEQGGIRQVSGTFSKQLSGNFSEGSGVDQVNSGPNTSPMYVDSPHSYHPYASVFTEGSFYKKIKFLCSFGGRILPRPNDGKLRYVGGETRIISIRKSIAWEELMRKTSAICSQSHTIKYQLPGEDLDALISVCSNEDLHHMIEEYEELERAGASQRLRIFLIPLNECESSSSNEAIVNQQSDADYHYVVAVNSMLDPSPQQSSSGRSLASHTSQFGNTIDYSSPHFHRDSSTSAFASEIKDLTPTSPNFAGLLSKPSPQYFTTLAGQTFNQMSPLPVVCDPQNSNGQLFMDKPYNAMNESITPFVTEKVPHDNTLYVDNGNYVDPVAYYNNLAQGHRRVNYHPNNQYIRESDQIRRPRENLHLHRHNRSNDFVSSATCNLNIPSYERPLITSDGSYHFNNIVSHPPESPSLLSESDPREGSRYTMLHVHSDSILNENDENSKAHLLFPRNVERDNFPSRKNSSHLEEYSLQPGEIIDRKEHLAKYQNLPIFGMTDNYKKVLDIGKENLQHAQKNNDFFGETNNGIDFKHLQHIYTPHGVCSSSPDLQRSECNASTESFVSLESPINLRGQTSVVQLDRATSELSMRSRNSSKMHHQYPMSVAKDSQPLYPGPFKSQNDKESSLPISYMDMISSQREVAVPVGDPAYYLHQKEENTIIENRSSENISEFCVNRPVSDSKGPKDSISSGIQSCLKVVSNVDEKVEVEPTSPKKEGIECDSPESESKHARPDSGNINKSTGDRETAEVESEIYGLQNIENDDLEEMQELGSGTFGTVYHGKWRGTDVAIKRIKSSCFSGRLSEQERLIKDFWREAQILSTLHHPNVVAFYGVVPNGPGGTLATVTEYMVHGSLKSVLMKREKVLDRRKRVLIAMDAAFGMEYLHLKNIVHFDLKCDNLLVNLGDPERPVCKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLDGNSCRVSEKVDIFSFGIVMWEILTGEEPYANMHCGAIIGGIVNNTLRPSIPKRCDSEWKKLMEECWSPDPAARPTFTDIKIRLRNISAALPKKRHNIGNR 1299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02542 1299 MobiDBLite consensus disorder prediction 959 988 - -
Vimu3g02542 1299 ProSiteProfiles Protein kinase domain profile. 1019 1289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02542 1299 SUPERFAMILY CAD & PB1 domains 337 430 - -
Vimu3g02542 1299 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1144 1156 IPR008271 GO:0004672|GO:0006468
Vimu3g02542 1299 ProSitePatterns Protein kinases ATP-binding region signature. 1025 1046 IPR017441 GO:0005524
Vimu3g02542 1299 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 341 423 - -
Vimu3g02542 1299 SMART serkin_6 1019 1289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02542 1299 CDD PB1_UP2 325 421 - -
Vimu3g02542 1299 CDD STKc_MAP3K-like 1025 1278 - -
Vimu3g02542 1299 Gene3D Transferase(Phosphotransferase) domain 1 1107 1297 - -
Vimu3g02542 1299 Pfam Protein tyrosine and serine/threonine kinase 1020 1279 IPR001245 GO:0004672|GO:0006468
Vimu3g02542 1299 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1012 1106 - -
Vimu3g02542 1299 PANTHER SERINE-THREONINE PROTEIN KINASE 366 1281 - -
Vimu3g02542 1299 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1107 1298 - -
Vimu3g02542 1299 Gene3D Phosphorylase Kinase; domain 1 1012 1106 - -
Vimu3g02542 1299 PRINTS Tyrosine kinase catalytic domain signature 1138 1156 IPR001245 GO:0004672|GO:0006468
Vimu3g02542 1299 PRINTS Tyrosine kinase catalytic domain signature 1253 1275 IPR001245 GO:0004672|GO:0006468
Vimu3g02542 1299 PRINTS Tyrosine kinase catalytic domain signature 1101 1114 IPR001245 GO:0004672|GO:0006468
Vimu3g02542 1299 PRINTS Tyrosine kinase catalytic domain signature 1209 1231 IPR001245 GO:0004672|GO:0006468
Vimu3g02542 1299 Gene3D - 340 422 - -
Vimu3g02542 1299 Pfam PB1 domain 337 420 IPR000270 GO:0005515
Vimu3g02542 1299 SMART PB1_new 336 423 IPR000270 GO:0005515
Vimu3g02542 1299 MobiDBLite consensus disorder prediction 959 1004 - -
Vimu3g02542 1299 SUPERFAMILY Protein kinase-like (PK-like) 1008 1279 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02542 Vimu-Chr3 39779123 39786607 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02542 117 453 MAP Kinase Kinase Kinase AT1G16270 36.657 3.87e-44 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vimu3g02542 PK_Tyr_Ser-Thr 2e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02542 - - gmx:100810711 1782.69