Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02534 ATGTCGGATGCACCAGCCAGCCCGAGTCACGAGAGTGGGGGCGAGCAGAGCCCGCGAGCTTCGTCGTCTGGTGCCAGGGAACAAGACCGCTTCCTTCCTATAGCCAATATCAGCCGCATCATGAAGAAGGGTCTGCCTCCCAACGGCAAGATTGCTAAAGACGCCAAAGATACTATGCAGGAATGTGTTTCTGAGTTTATCAGCTTCATTACCAGCGAGGCGAGTGAGAAATGTCAGAAAGAAAAGAGAAAGACTATTAATGGAGACGATTTGTTATGGGCAATGGCTACTTTAGGTTTTGAAGACTACATAGAACCCCTTAAGGTGTACCTGGCAAGCGGTTCTTATACTATAATTAACTTACTTTTTCCTTTTCCTTTTTGTTTGGTTGGTGACTTTGGAATGTGCACAATATCACAGACGGAGGGTGACACCAAAGGATCTACTAGAGGTGGTGATGGATCTGCTAGACCAGATCAAGTTGGCCTTGCAGGTCAAAATTCTCAGCTTGTTCATCAGGGTTCACTGAACTATATTAGTTTGCAGGTAATGTTCTTTCTTTCTCCTTCTCTATTGAATGCCTGA 585 0.4547 MSDAPASPSHESGGEQSPRASSSGAREQDRFLPIANISRIMKKGLPPNGKIAKDAKDTMQECVSEFISFITSEASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLASGSYTIINLLFPFPFCLVGDFGMCTISQTEGDTKGSTRGGDGSARPDQVGLAGQNSQLVHQGSLNYISLQVMFFLSPSLLNA 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02534 194 FunFam Nuclear factor Y, subunit B1 21 119 - -
Vimu3g02534 194 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Vimu3g02534 194 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Vimu3g02534 194 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Vimu3g02534 194 Gene3D Histone, subunit A 18 117 IPR009072 GO:0046982
Vimu3g02534 194 MobiDBLite consensus disorder prediction 1 28 - -
Vimu3g02534 194 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Vimu3g02534 194 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vimu3g02534 194 SUPERFAMILY Histone-fold 28 112 IPR009072 GO:0046982
Vimu3g02534 194 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 15 112 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vimu3g02534 194 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02534 Vimu-Chr3 39717248 39718349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02534 9 174 CCAAT-HAP3 Transcription Factor Family AT2G37060 65.269 1.72e-68 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vimu3g02534 CBFD_NFYB_HMF 2.1e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02534 K08065 - gmx:100779577 278.87