Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02527 ATGAGCTTTAATAGTGTTTTATTTTATTTGTCTGGTTTCAAAATTATGTTTCAGGTTGACTATGCATGTACGCCTGAAGAAGTCCAGCAGCATTTTCAGTCCTGTGGAACTGTGAACAGGGTGACCATACTGACAGACAAATTTGGTCAACCAAAAGGGTTTGCTTATGTAGAATTTGTGGAGATTGATGCAGTTCAGAATGCTCTCCTGTTAAATGAATCAGAATTGCATGGTCGACAACTGAAGGTGTCAGCCAAGCGTACAAACGTTCCTGGAATGAAGCAGTATTATGGAAGAAGACCTACTGGTTTCCGATCTAGGAGGCCTTTCATGCCTGCTCCATTCTTTCCACCGTATAGTTATGGGTAA 369 0.4119 MSFNSVLFYLSGFKIMFQVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYYGRRPTGFRSRRPFMPAPFFPPYSYG 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02527 122 SUPERFAMILY RNA-binding domain, RBD 19 109 IPR035979 GO:0003676
Vimu3g02527 122 Gene3D - 15 92 IPR012677 -
Vimu3g02527 122 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 88 IPR000504 GO:0003723
Vimu3g02527 122 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 82 IPR000504 GO:0003723
Vimu3g02527 122 CDD RRM_II_PABPs 18 84 - -
Vimu3g02527 122 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 19 107 - -
Vimu3g02527 122 SMART rrm1_1 14 84 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02527 Vimu-Chr3 39639590 39644916 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02527 19 66 Eukaryotic Initiation Factors Gene Family AT2G36660 40.385 3.52e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02527 K14396 - gmx:100527545 206.453