Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02523 ATGTATTGGGGAGTTATGGCAAGCAACATGGGATGGGGTGTGATAGAGGAACAAGGATGGAGGAAGGGTCCTTGGACTGCTGAAGAAGACAGATTGCTCATTCAGTATGTCAGATTGCATGGTGAAGGCAGATGGAACTCTGTTGCAAGACTTGCAGGACTGAAAAGAAATGGAAAGAGCTGCAGACTGAGATGGGTGAATTACCTCAGACCAGACCTAAAGAAGGGTCAGATAACACCACAGGAAGAAAGCATAATTCAGGAGCTGCATGCTAGGTGGGGAAACAGAGTCCCTTCTACATCTCAAGAGACACAAGAAATGGTTAACATGTGTCCAAACACTTCAGAGCAGCAGGGCTACTTCTACTCTATGTTCAATGTCAGTGACAATGTCTCTGCACCAGAGTCCTCAAACGAAGAAATTCTCTGGGATGGACTGTGGAACTTAGACGATGTTCTTTGCAATTTCAATGCAGCAAGTGCTACAAGCAAAGCTAGTTTACACAATTTAGTCACTCCTTTCAGTTAA 528 0.4451 MYWGVMASNMGWGVIEEQGWRKGPWTAEEDRLLIQYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKKGQITPQEESIIQELHARWGNRVPSTSQETQEMVNMCPNTSEQQGYFYSMFNVSDNVSAPESSNEEILWDGLWNLDDVLCNFNAASATSKASLHNLVTPFS 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02523 175 Gene3D - 22 74 - -
Vimu3g02523 175 FunFam Myb transcription factor 22 74 - -
Vimu3g02523 175 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Vimu3g02523 175 CDD SANT 24 69 IPR001005 -
Vimu3g02523 175 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 73 IPR017930 -
Vimu3g02523 175 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Vimu3g02523 175 SUPERFAMILY Homeodomain-like 23 96 IPR009057 -
Vimu3g02523 175 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 17 98 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vimu3g02523 175 SMART sant 21 71 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02523 Vimu-Chr3 39610768 39611727 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02523 17 96 MYB Transcription Factor Family AT3G24310 90.000 3.01e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu3g02523 Myb_DNA-binding 3.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02523 K09422 - qsa:O6P43_003129 223.787