Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02509 ATGTTGCAGGATGTTTTTGATCAGCCACTTCCACCAAAGGCCGAACCGCAACAGCAAGTCCCCATTGAAGAAATTTCAAGCCCTTTTAGCAGTGCTCGAATTTTCGAATTTTGTAACGCTGAATTTTTCCCAGAGGCTTTGCCAAATTCTGAGGTTACTTCCAGCTCAAACTGTTGCTATGAGGAGAACTCCTCATATGCCACAACAAACAAATCTTTAACTGTAGATGTAGAAAATAAATTGAATAGCAATAGCAACACAGTCACCACACCAACTAGCATTACCACCACCAACAACAACACAACCAACAGTAGTAACCTGTCTATTATCTTAGACCCCCAAGATGAAATGGACAATAATGACATCGCTGCCTCCATAGACTTCTCACTATCTCCATCTTTCAATGTTCCTCCATTTCTCCCAGTCACATCCCAACAAGAACAGTTTGATTTCTCTTATGTGCAGCCTCAGGTCCAATTACCTGCATTTTCAGTTGTGGAGGGCTTCTCTCAGTATCCCACTGACCCCGTTGCACCTCCACTTATGGGGGCTCCCTTACCTTCTGTATTTGAAGAGGATTGCATATCTTCTGTTTCTTCTTATGTGCCTCTCAACCCTTCATCTCCTTGCACTTATCTCAGTCCTGGCATGCCACCATACATGCCTACCGGTCCCCTTACTAGTGCCTTATCAACAGATAGTTCTGGATATTTTGGTGGGAACATTCTTCTTGGTTCTGAACTTCAGACACAAGAATTGGAATACCAAGGAGAAAATGGAAGAATGTATTGTACAGATTCAATTCAGCGGGTGTTTAACCCTCCAGACCTTCAGGTTTCTAGTCCGAAAGGTCGCAGCAGTAAGGCACTTGGTACTGAGAGTCAGCAACTAGTTCCCGGGGGTGGTAGTTCTGCCACTCTAACACCTGAAATCTCTAACTTAGAGGACTCCTCATTCAAAGTTGGAAAACTTTCTGTTGAGCAAAGGAAAGAAAAGATCAATAGATACATGAAGAAAAGAAATGAAAGAAACTTCAGCAAGAAAATTAAGGTACTCCTTGCTTATAAACCACTTCATATTGCATACTTCCAAGTTCAACTAACGATGCAACCAAATGTGCAGTATGCCTGCCGCAAAACTCTGGCAGATAGCCGACCTCGGGTTCGAGGAAGGTTTGCAAAGAATGATGACTTTGGAGAAACCAATAGAACTACTAGTAGCAATCATGAAGATGACGACGAAGAAGAAGTAGTTGTGAAGGATGAAGATGATATGGTTGATTCCTCAGATATTTTTGCTCATATCAGTGGAGTAAACTCCTTCAAATGCAACTATTCCATCCAGTCCTGGATTTGA 1356 0.4233 MLQDVFDQPLPPKAEPQQQVPIEEISSPFSSARIFEFCNAEFFPEALPNSEVTSSSNCCYEENSSYATTNKSLTVDVENKLNSNSNTVTTPTSITTTNNNTTNSSNLSIILDPQDEMDNNDIAASIDFSLSPSFNVPPFLPVTSQQEQFDFSYVQPQVQLPAFSVVEGFSQYPTDPVAPPLMGAPLPSVFEEDCISSVSSYVPLNPSSPCTYLSPGMPPYMPTGPLTSALSTDSSGYFGGNILLGSELQTQELEYQGENGRMYCTDSIQRVFNPPDLQVSSPKGRSSKALGTESQQLVPGGGSSATLTPEISNLEDSSFKVGKLSVEQRKEKINRYMKKRNERNFSKKIKVLLAYKPLHIAYFQVQLTMQPNVQYACRKTLADSRPRVRGRFAKNDDFGETNRTTSSNHEDDDEEEVVVKDEDDMVDSSDIFAHISGVNSFKCNYSIQSWI 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02509 451 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 51 412 IPR045281 GO:0009909
Vimu3g02509 451 ProSiteProfiles CCT domain profile. 353 395 IPR010402 GO:0005515
Vimu3g02509 451 MobiDBLite consensus disorder prediction 390 417 - -
Vimu3g02509 451 MobiDBLite consensus disorder prediction 1 22 - -
Vimu3g02509 451 MobiDBLite consensus disorder prediction 274 307 - -
Vimu3g02509 451 Pfam CCT motif 370 395 IPR010402 GO:0005515
Vimu3g02509 451 MobiDBLite consensus disorder prediction 390 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02509 Vimu-Chr3 39511026 39514303 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02509 299 402 C2C2-CO-like Transcription Factor Family AT5G24930 30.275 1.63e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu3g02509 CCT 3.2e-10 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02509 - - gmx:100803778 653.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02509 3 39511026 39514303 Vimu3g02509 3 39511026 39514303 ECH