Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02508 ATGAACGGCAGTTCCAGCGAAAGCAAGACAAGGGACATGGACGGGCAGCTGGCGGGGCTGGGCTACAAAGTCCGCTCATCGGAGCTCTGTCAAGTGGCTGAGAATATGGAACGTTTAGAGAACGCCATCAACACTGTCAACTCATCCAGGGACATTTCTCAAGTAGTCTCCGACGCACTCCTATACGATCCCTCCAACATAGGTTTAGGTTCCTGGGTGGACACTCTTCTCTCCGAGCTCGACCAAACCGTCTCGTTGCCCTACGATCTATCTTCGGACCTACCCGATTTGCCCACGGATCCGAATCGCCAACTGGGGATGGTAACCACCGTCGAAGAAGACTCCGGGATAAGACTCGTTCACACGCTCATCACGTGTGCGGATTCCGTGCAACGTGGCGACCTGGCATTCGCCGGCTCCCTCATCGAGAGCATGCAGGTACTGCTGGCTCACGTGAACACCTCCTGCGGCATCGGTAAGGTCGCCGGCTACTTCATCGACGCCTTACGCCGCCGAATCTCGTCTCCGCAAGGCGCAGCGTTTCCAACATCCCCCTATGAGAACGACGTTCTCTATCACCACTACTACGAGGCCTGTCCCTACCTAAAGTTCGCGCACTTCACTGCGAACCAGGCGATCCTTGAAGCATTCAACGGTCACGACTGCGTCCACGTCATCGATTTCAACCTGATGCAGGGGCTCCAATGGCCGGCTCTCATACAAGCGCTAGCACTCCGCCCGGGAGGTCCGCCGTCGCTGAGGCTGACCGGCGTGGGACCTCCCTCGCCGGACGAGCGAGACACACTGCGCGAGATAGGTGCGAGGCTGGCGGAGCTGGCACACTCGGTGAACGTGCGGTTCACGTTCCGTGGAGTGGCAGCATGGCGGCTGGAGGATGTGAAGCCGTGGATGCTGCACGTGAGTCCGAAGGAGGCTGTGGCAGTGAACTCGATCATGCAGCTACACCGGGTGCTCGGTTCGGGAATCGATACGGTTCTCGGCTGGATCCGAGGTTTAAACCCAAAGATCGTGACGGTTGTGGAGCAGGAAGCGAACCACAACGGGGAAGGTTTTCTGGAGCGGTTCACGGAGGCTCTACACTACTACTCGACCGTCTTCGACTCGCTGGAAGCGTGTTCAGTGGAGCCGGACAAGGGTCTCGCGGAGATGTACCTGCAGAGGGAGATTTGCAACGTGGTGTGCTGTGAGGGACCGGCGCGACTGGAGCGGCACGAGCCGCTGGTAAAATGGAGGGAGCGGCTGGGCAGAGCCGGATTCAGGCCCTTGCATTTGGGTTCGAACGCTTACAAACAAGCGAGCATGCTGTTGACTCTGTTCTCAGCCGAGGGTTACTGTGTGGAAGAGAATCAAGGGTGTTTGACTCTGGGTTGGCACAGCCGGCCCCTGATTGCGGCTTCGGCTTGGCAAGCCGCGCCCCTAAGAGAGGGTGAAACGGTGCGTTTACAGCGCTGA 1473 0.5859 MNGSSSESKTRDMDGQLAGLGYKVRSSELCQVAENMERLENAINTVNSSRDISQVVSDALLYDPSNIGLGSWVDTLLSELDQTVSLPYDLSSDLPDLPTDPNRQLGMVTTVEEDSGIRLVHTLITCADSVQRGDLAFAGSLIESMQVLLAHVNTSCGIGKVAGYFIDALRRRISSPQGAAFPTSPYENDVLYHHYYEACPYLKFAHFTANQAILEAFNGHDCVHVIDFNLMQGLQWPALIQALALRPGGPPSLRLTGVGPPSPDERDTLREIGARLAELAHSVNVRFTFRGVAAWRLEDVKPWMLHVSPKEAVAVNSIMQLHRVLGSGIDTVLGWIRGLNPKIVTVVEQEANHNGEGFLERFTEALHYYSTVFDSLEACSVEPDKGLAEMYLQREICNVVCCEGPARLERHEPLVKWRERLGRAGFRPLHLGSNAYKQASMLLTLFSAEGYCVEENQGCLTLGWHSRPLIAASAWQAAPLREGETVRLQR 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02508 490 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 99 472 IPR005202 -
Vimu3g02508 490 Pfam GRAS domain family 119 476 IPR005202 -
Vimu3g02508 490 Pfam Transcriptional regulator DELLA protein N terminal 14 83 IPR021914 -
Vimu3g02508 490 ProSiteProfiles GRAS family profile. 110 476 IPR005202 -
Vimu3g02508 490 Gene3D - 12 80 IPR038088 -
Vimu3g02508 490 SMART DELLA_2 14 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02508 Vimu-Chr3 39507680 39510393 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02508 5 476 GRAS Transcription Factor Family AT1G14920 47.206 1.77e-158 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu3g02508 GRAS 2.1e-125 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02508 K14494 - gmx:100803245 775.007