Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02503 AGGGAGAGAGGGGGAATGGATTCGGATCAGGGAAAATTATTCATCGGTGGGATATCGTGGGACACTACGGAGGACAAGCTCAAGGAGCATTTCGGCAACTACGGCGACGTTTTGAGCACTTCTGTTATGCGAGAGAAGAACACTGGCAAGCCCAGGGGCTTTGGTTTCGTCGTCTTCGCGGATCCCACCATTCTCGATAGGGTTCTCGAGGATAAACATGTCATAGATGGCAGAACGGTTGATGCCAAAAAGGCTTTCTCAAGAGAGGATCAACAAATTTCTGTCACCTCGAGAGGTGGAAATTCCAATTCTGGCATGAATTCTGGAAATGGAGGAAACATCAGAACTAAAAAGATATTTGTTGGAGGGCTGCCTCCTACCCTGACTGAAGAAAAATTTCGCCAGTACTTTGAGTCTTATGGACACGTAACCGATGTAGTAGTCATGTATGACCAGAATACTGGACGGCCACGAGGATTTGGTTTTATTTCATTTGATACTGAGGAGGCTGTTGATAGGGTATTACATAAATCATTTCATGATTTAAACGGTAAACAAGTTGAGGTAAAGCGTGCACTTCCCAAGGATGCCAATCCTGGTGCAAGTGGCCGTATGGGTGGTGCTGGAGGTGGTGGTTCTGGAATTGGTGGGTATCAAGGGTATGGGGCATCTGGTGGTAACCAAAATGCATATGATGGTCGAATGGATTCTAGTAGGTATATGCAGCCTCAAAGCGCTGCAGGTGGATTCCCTCCTTATGGTTCTTCTGCCTACAGTGCTCCTGGGTATGGATATGGTCCGGCTAATAATGGGATTGGGTATGGTGCATATGGAAGTTATGGTGGTGCCACTGCAGGGTATGGTGGACCTGCTGGTGCAACATATGGGAATCCTAATGTTCCTAATGCTGCTTATGCTGGAGGTCCTCCAGGGGGCCCAAGGAGTTCATGGCCTGCTCAGGCACCCTCTGGTTATGGATCTATGGGCTATGGGAACACTCCTCCTTGGGGTGCTCCAAGTGGCGGTGCTGGCTCTGGTGGCAGTGGTCCTGGTTCAGCAGCTGCAGGTCAGTCCCCTGGTGGAGCTGCTGGATATGGGAACCAAGGTTATGGATATGGTGGATATGGTGGATATGGTGGAAGTGATAGTTCTTATGCGAATTCAAGTGTATATGGCACTGTTGGTGGACGAACAGGGAGTGCTCCAAACAATAGTGTTAGTGGTCCTGGTGGGAGTGAACTAACAAGTAGTGGTGGCAGTGGTAGCTATATGAGTGGTGGCTATGGGGATGCAAATGGAAATTCAGGTTATGGAAATGCAGCTTGGAGATCAGAACAAACTCATGCATCTGGAAATTATGGAACACCACAGGGAAATGGTGGCCAGGTTGGTTACGGTGGTGGCTATGGTGGTGCTCAGTCTCGACAAGCCCAACAACAGTAA 1443 0.4872 RERGGMDSDQGKLFIGGISWDTTEDKLKEHFGNYGDVLSTSVMREKNTGKPRGFGFVVFADPTILDRVLEDKHVIDGRTVDAKKAFSREDQQISVTSRGGNSNSGMNSGNGGNIRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDTEEAVDRVLHKSFHDLNGKQVEVKRALPKDANPGASGRMGGAGGGGSGIGGYQGYGASGGNQNAYDGRMDSSRYMQPQSAAGGFPPYGSSAYSAPGYGYGPANNGIGYGAYGSYGGATAGYGGPAGATYGNPNVPNAAYAGGPPGGPRSSWPAQAPSGYGSMGYGNTPPWGAPSGGAGSGGSGPGSAAAGQSPGGAAGYGNQGYGYGGYGGYGGSDSSYANSSVYGTVGGRTGSAPNNSVSGPGGSELTSSGGSGSYMSGGYGDANGNSGYGNAAWRSEQTHASGNYGTPQGNGGQVGYGGGYGGAQSRQAQQQ 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02503 480 FunFam Heterogeneous nuclear ribonucleoprotein 1 10 92 - -
Vimu3g02503 480 MobiDBLite consensus disorder prediction 386 429 - -
Vimu3g02503 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 194 IPR000504 GO:0003723
Vimu3g02503 480 SMART rrm1_1 118 190 IPR000504 GO:0003723
Vimu3g02503 480 SMART rrm1_1 12 83 IPR000504 GO:0003723
Vimu3g02503 480 CDD RRM1_hnRNPA_hnRNPD_like 13 83 - -
Vimu3g02503 480 MobiDBLite consensus disorder prediction 386 480 - -
Vimu3g02503 480 MobiDBLite consensus disorder prediction 89 112 - -
Vimu3g02503 480 SUPERFAMILY RNA-binding domain, RBD 7 114 IPR035979 GO:0003676
Vimu3g02503 480 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 6 480 - -
Vimu3g02503 480 FunFam heterogeneous nuclear ribonucleoprotein 1 112 234 - -
Vimu3g02503 480 SUPERFAMILY RNA-binding domain, RBD 116 225 IPR035979 GO:0003676
Vimu3g02503 480 MobiDBLite consensus disorder prediction 437 459 - -
Vimu3g02503 480 Gene3D - 112 234 IPR012677 -
Vimu3g02503 480 Gene3D - 9 93 IPR012677 -
Vimu3g02503 480 MobiDBLite consensus disorder prediction 326 360 - -
Vimu3g02503 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 80 IPR000504 GO:0003723
Vimu3g02503 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 185 IPR000504 GO:0003723
Vimu3g02503 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 87 IPR000504 GO:0003723
Vimu3g02503 480 CDD RRM2_Hrp1p 118 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02503 Vimu-Chr3 39445968 39448418 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02503 13 205 Eukaryotic Initiation Factors Gene Family AT2G23350 24.378 9.16e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02503 K14411 - gmx:100811267 605.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02503 3 39445968 39448418 Vimu3g02503 3 39445968 39448418 ECH