Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02490 ATGTTAAAAGCAGTGGCATCTGGGCTGTTGATTACCTCTGTCCTCATATGCGTATCTGCTAATGATAATGGATTTCCTAGATGTAACTGCGATGATGAGGCCAGCTTCTGGACTATTGAAAGCATTCTGGAGTGTCAGAGAGTTGGTGATTTCTTGATTGCTGTGGCCTACTTCTCCATCCCCATTGAGCTGCTTTATTTTATCAGTTGCTCAAACGTCCCATTCAAATGGGTCCTGATTCAGTTCATTGCCTTCATTGTACTATGTGGGTTGACACATTTGCTCAATGGGTGGACCTATGGTCCTCATACTTTCCAACTTATGGTGGCACTTACTGTCTCTAAAATTCTCACTGCATTGGTGTCATGTGCCACCGCCATAACCCTCATTACTCTGATTCCTTTGCTTCTCAAAGTGAAGGTCAGAGAGTTCATGCTGAAGAAGAAGACATGGGATCTTGGACGTGAGGTTGATAATATTATGAGACAAAGGGAGGCTGCAGTGCATGTAAGAATGCTTACTCAGGAGATACGCAAGTCACTGGATAGACACACTATTCTCTATACCACTTTGGTGGAGCTGTCTAAAACACTGAGCTTGCAAAATTGTGCTGTGTGGATGCCCAATGTTGATAAAACTGAGATGAACCTTACTCATGAATTAAATGGAAGGAATTTCAATTTGTCCATACCCATTAATGATCCAGATGTTGTGAGAATTAAGGGAAGCGACCGGGTGAATATACTTAGCCCCGACTCAGCACTTGCTGTTGGAAGTAGTGGAGCTTCTGGAGAGGCAGGGCCAGTTGCGGCAATCCGAATGCCTATGCTACGTGTTTGTAATTTCAAAGGAGGTACACCCGAACTAAGACAGACTTGTTATGCAATATTGGTCTTAATTCTTCCTACTGGAGAGCCTAGATCTTGGAGCAATCAGGAGCTGGAGATAATTAAGGTGGTTGCTGATCAGGTTGCAGTGGCTCTATCTCATGCTGCAATTCTTGAAGAGTCCCAACTTATGAGAGAGAAGTTGGAGGAACAAAATCGAGCTTTGCAACAGGCAAAAAGGAATGCTATGATGGCAAGCCAGGCAAGAAATGCATTTCAGAAAGTCATGAGTGATGGAATGAGGAGGCCAATGCACTCAATTTTGGGATTGCTTTCAATGATACAAGATGATAATTTGAGGAACGAACAGAAACTTATCGTGGATGCAATGCTTAGGACCAGCAATGTCCTATCAAACTTGATAAACGATGCCATGGACAACTCAACTAAGGATGATGGAAGATTTCCTTTGGAGATAAGGTCTTTTGGGTTACATTCCATGCTGAAGGAAGCAGCTTGCCTTTCAAAATGCATGTGTGTTTATGGGGGCTTTGGTTTTATGGTTGAGGTTGAGAAGTCTCTGCCAGACAATGTTATGGGTGATGAGAGGAGGGTTTTTCAGGTGATTCTACATATGGTTGGGAATCTACTACAACACAACCACGGGGGAGGGATCCTAGTATTTCGGGTTTTTGCAGAAACTGGAAGTCAGGGAAGAAGTGACAAAGGGTGGACAGCCTGGAGACCAAGCTCTTCTAGTGGTGATGTAAATATTAGATTTGAGGTAGGGATCAACAGTAGTGATTCTGAAGTGGGGAGTTCGTCAGGACTTGGGGGTAGGAATTATAACAGTGATAGAGTTGGTGGCAGATTGAGCTTCAATATTTGCAAGAGGGTAGTGCAGTTGATGCAGGGGAACATATGGTTAGTACCTTGTGCTCATGGTTATCCTCAAAGTATGACACTTGTTCTTCGGTTTCAATTACGACCATCCATTACCATAGCCATCTCCGAGCCTGGAGAAGGTTCAGAGCGTACCGATTCGAATTCGATGCTGAGAAGTCTGCAAGTTCTTTTAGTGGACAATGATGATGTAAATAGAGCAGTGACCCAAAAATTGCTTCAGAAACTAGGTTGTGTTGTAACTCCAGTAACTTCAGGATTTGAATGCCTTACTGTCATTGGACCTGCTGGATCTTCGATTCAAGTCATTCTTTTAGATCTTCACATACCTGATTTAGATGGCTTTGAAGTTGCCACGAGGATTCGGAAGTTTAGAAGTGGAAATCGGCCAATGATAGTAGCCTTGACAGCAAGTGCAGAAGAAGATTTGTGGGACAGATGCATGCAAGTTGGTATTAATGGAGTTATCCGTAAACCAGTTTTGTTGCAAGGAATTGCTAGTGAACTCAGAAGAATCCTGATGCAGGGAAATAATGTCCTGTGA 2274 0.4318 MLKAVASGLLITSVLICVSANDNGFPRCNCDDEASFWTIESILECQRVGDFLIAVAYFSIPIELLYFISCSNVPFKWVLIQFIAFIVLCGLTHLLNGWTYGPHTFQLMVALTVSKILTALVSCATAITLITLIPLLLKVKVREFMLKKKTWDLGREVDNIMRQREAAVHVRMLTQEIRKSLDRHTILYTTLVELSKTLSLQNCAVWMPNVDKTEMNLTHELNGRNFNLSIPINDPDVVRIKGSDRVNILSPDSALAVGSSGASGEAGPVAAIRMPMLRVCNFKGGTPELRQTCYAILVLILPTGEPRSWSNQELEIIKVVADQVAVALSHAAILEESQLMREKLEEQNRALQQAKRNAMMASQARNAFQKVMSDGMRRPMHSILGLLSMIQDDNLRNEQKLIVDAMLRTSNVLSNLINDAMDNSTKDDGRFPLEIRSFGLHSMLKEAACLSKCMCVYGGFGFMVEVEKSLPDNVMGDERRVFQVILHMVGNLLQHNHGGGILVFRVFAETGSQGRSDKGWTAWRPSSSSGDVNIRFEVGINSSDSEVGSSSGLGGRNYNSDRVGGRLSFNICKRVVQLMQGNIWLVPCAHGYPQSMTLVLRFQLRPSITIAISEPGEGSERTDSNSMLRSLQVLLVDNDDVNRAVTQKLLQKLGCVVTPVTSGFECLTVIGPAGSSIQVILLDLHIPDLDGFEVATRIRKFRSGNRPMIVALTASAEEDLWDRCMQVGINGVIRKPVLLQGIASELRRILMQGNNVL 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02490 757 SMART HisKA_10 364 429 IPR003661 GO:0000155|GO:0007165
Vimu3g02490 757 Pfam His Kinase A (phospho-acceptor) domain 365 429 IPR003661 GO:0000155|GO:0007165
Vimu3g02490 757 SMART gaf_1 182 338 IPR003018 GO:0005515
Vimu3g02490 757 CDD HATPase_ETR2_ERS2-EIN4-like 470 600 - -
Vimu3g02490 757 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 25 752 - -
Vimu3g02490 757 Pfam GAF domain 182 328 IPR003018 GO:0005515
Vimu3g02490 757 PIRSF Ethylen_sen_hybr_HK 1 757 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Vimu3g02490 757 Gene3D - 161 329 IPR029016 -
Vimu3g02490 757 SMART REC_2 631 750 IPR001789 GO:0000160
Vimu3g02490 757 ProSiteProfiles Response regulatory domain profile. 632 750 IPR001789 GO:0000160
Vimu3g02490 757 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 418 588 IPR036890 -
Vimu3g02490 757 SUPERFAMILY GAF domain-like 185 331 - -
Vimu3g02490 757 CDD REC_ETR-like 631 746 - -
Vimu3g02490 757 Pfam Response regulator receiver domain 633 740 IPR001789 GO:0000160
Vimu3g02490 757 CDD HisKA 362 424 IPR003661 GO:0000155|GO:0007165
Vimu3g02490 757 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 476 604 IPR003594 -
Vimu3g02490 757 FunFam Ethylene receptor 4 331 425 - -
Vimu3g02490 757 SUPERFAMILY CheY-like 629 750 IPR011006 -
Vimu3g02490 757 Coils Coil 334 364 - -
Vimu3g02490 757 ProSiteProfiles Histidine kinase domain profile. 371 583 IPR005467 -
Vimu3g02490 757 Gene3D - 428 604 IPR036890 -
Vimu3g02490 757 Gene3D - 617 755 - -
Vimu3g02490 757 Gene3D - 330 427 - -
Vimu3g02490 757 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 349 430 IPR036097 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02490 Vimu-Chr3 39330621 39333446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02490 20 750 Miscellaneous Gene Families AT3G04580 58.177 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu3g02490 GAF 7.3e-12 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02490 K14509 - gmx:100787425 1374.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02490 3 39330621 39333446 Vimu3g02490 3 39330621 39333446 ECH
Vimu2g01625 2 11527468 11530435 Vimu3g02490 3 39330621 39333446 ECH