Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02488 ATGGAGATAACTGGAGGAGCTGATGTTGCCGAAAGTGTAGCCCAATTTGCAAGAAGGCGTCAGCGTGGGGTTTGTGTACTCAGTGGGAGTGGCTCGGTGGCCAATGTTACTCTTAGACAACCTGCTGCTCCTGGAGCTGTGGTGGCACTTCATGGGAGGTTTGAGATTTTGTCCCTCACTGGGACCTTTTTACCCGGTCCTGCTCCTCCAGGATCCACAGGACTCACAGTGTATCTTGCTGGAGGCCAGGGCCAAGTACTAGGAGGGAGTGTGGTTGGGCCTCTAGTTGCCACAGGACCAGTGATGGTGATTGCTGCAACTTTTTCTAATGCAACATATGAGAGACTTCCACTTGATGAAGATGATGAAGGGCCCAGTTCCGCCGCCGCGGTACAAGGAGGAGGATCGCCACCGCCACTTGGAATTGGAAGCGGTGGGGGTGGGCAATTGCAGGGTGGGATTCCAGATCCATCATCTTTGCCTTTGTATAATCTTCCACCAAATGGAGGAGGGGGCCAAGTGGGGCATGAAGCCCTTGCTTGGGCTCATGGACGGGCACCTTTCTGA 567 0.5414 MEITGGADVAESVAQFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHGRFEILSLTGTFLPGPAPPGSTGLTVYLAGGQGQVLGGSVVGPLVATGPVMVIAATFSNATYERLPLDEDDEGPSSAAAVQGGGSPPPLGIGSGGGGQLQGGIPDPSSLPLYNLPPNGGGGQVGHEALAWAHGRAPF 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02488 188 FunFam AT-hook motif nuclear-localized protein 1 123 - -
Vimu3g02488 188 SUPERFAMILY AF0104/ALDC/Ptd012-like 2 121 - -
Vimu3g02488 188 Gene3D - 1 123 - -
Vimu3g02488 188 Pfam Plants and Prokaryotes Conserved (PCC) domain 2 110 IPR005175 -
Vimu3g02488 188 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 183 IPR014476 GO:0003680
Vimu3g02488 188 PIRSF ESCAROLA 1 188 IPR014476 GO:0003680
Vimu3g02488 188 MobiDBLite consensus disorder prediction 117 169 - -
Vimu3g02488 188 CDD DUF296 2 108 IPR005175 -
Vimu3g02488 188 ProSiteProfiles PPC domain profile profile. 1 130 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02488 Vimu-Chr3 39315825 39318813 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02488 1 188 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 63.731 4.19e-68 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02488 - - var:108341460 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02488 3 39315825 39318813 Vimu3g02488 3 39315825 39318813 ECH