Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02471 ATGGATCTTGCAAGCAGAAGATACTTGATTTATGTCTCACAACATGTGTCACAATCGGAAGCACTCTCTCCGGTCACAAGTCCAGGGGGTTCGTTCTTTCATCCTCATCAGCATTCTTCTAGCACCAGTTTTCCCATAATTGCAATTGCCATAATAGGAATAATGGCCACGGCTTTCTTGCTTGTGAGCTACTACATCTTTGTGATCAAATGCTGCCTCAATTGGCACAGAATTGATATTCTAAGACGTTTTTCTCCATCTAGAAGGCGTGAAGATCCATCACCAATGTACTCACCAGGCACAGAAGCTCGTGGACTGGATGAAGCAATGATCCGGTTAATCCCTGTGATTCAATACAAGACACAAGGGGATGATAGAGAATCTGGAGAATGTGCTGTTTGCTTGAATGAGTTTCAAGAAGATGAGAAACTCAGGATTATACCAAATTGCAGTCATGTGTTTCACATTGATTGCATAGATGTTTGGCTTCAGAGCAATGCCAATTGCCCTCTCTGTAGAACAAGCATTTCCTTGACAAGCAGATTCCACGTGGAGCAGCTTCTTGCACTGAGGTCTTCTTCCCCTCCGGATCAAACTCCACCTGGGGAAAACCACATAGGAGGAGATGAAGATTTTGTTGTAATTGAATTGGGTAATATCCATGATAGAAGCCAAAATTTGCGAGAGAGAGGAAATGGTTTGGAGTTACCATCACCAACATCTCTTATTAGTTCTTGTACGCCAAGGAAATTGGAACAAGGAAATGTGCAGAAGAAAGCAATGAAACTGCATAAAGTGACGAGCATGGGAGATGAGTGTATTGATATTAGAGCAAAAGATAACCAGTTTTCAGTGCAACCAATCAGAAGGTCTTTCTCCATGGACTCATCAGGGGATAGACAGTTCTATTTAGCAGTTCAAGAAGCTCTGAGGCTGCAGAACAGACAAGTCAATGAAGTCAGCACCCCCGAAGGCTGCAGTGGTAGTGCTAGCAATAGAGTCAAGAGATCATTCTTTTCCTTCGGACATGGAAGTAGATCCAGGAGTTCTGTGCAACCTGTTTCTTTGGAACCCTGA 1077 0.4318 MDLASRRYLIYVSQHVSQSEALSPVTSPGGSFFHPHQHSSSTSFPIIAIAIIGIMATAFLLVSYYIFVIKCCLNWHRIDILRRFSPSRRREDPSPMYSPGTEARGLDEAMIRLIPVIQYKTQGDDRESGECAVCLNEFQEDEKLRIIPNCSHVFHIDCIDVWLQSNANCPLCRTSISLTSRFHVEQLLALRSSSPPDQTPPGENHIGGDEDFVVIELGNIHDRSQNLRERGNGLELPSPTSLISSCTPRKLEQGNVQKKAMKLHKVTSMGDECIDIRAKDNQFSVQPIRRSFSMDSSGDRQFYLAVQEALRLQNRQVNEVSTPEGCSGSASNRVKRSFFSFGHGSRSRSSVQPVSLEP 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02471 358 CDD RING-H2_EL5-like 130 173 - -
Vimu3g02471 358 SUPERFAMILY RING/U-box 122 179 - -
Vimu3g02471 358 SMART ring_2 131 172 IPR001841 -
Vimu3g02471 358 Pfam Ring finger domain 130 173 IPR001841 -
Vimu3g02471 358 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Vimu3g02471 358 FunFam E3 ubiquitin-protein ligase ATL6 96 179 - -
Vimu3g02471 358 PANTHER RING-H2 FINGER PROTEIN ATL16 33 354 IPR044600 GO:0016567|GO:0016740
Vimu3g02471 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 181 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02471 Vimu-Chr3 39209060 39211335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02471 35 358 C3H Transcription Factor Family AT1G04360 53.371 3.81e-105 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02471 - - gmx:100775286 568.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02471 3 39209060 39211335 Vimu3g02471 3 39209060 39211335 ECH