Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02468 ATGGAGGAGAACCAGAAGGGGAAGCAGGGCAAAGAAGAAGTGCGCTACCGTGGCGTGCGGCGGCGGCCTTGGGGGAAGTACGCGGCGGAGATAAGGGATCCGTCAAAGCAAGGGTCGAGGCTGTGGTTGGGGACATTTGACACCGCTGAAGAAGCTGCCAGAGCTTATGATCGTGCAGCGTTTAACTTGAGAGGTCATCTTGCTATTCTGAATTTTCCTAGTGAGTACTATTCTCAGATAAGGGGTTCACCACCTTATCCACCTCATTTAGCACCGCCGTCTTCTTCCTCTTCTCATGGTGGTGGAAGCACTTCTTCTTCTGGTGCATATCATAGGCCTGTTTTCGAGATTCCTTGTTTGGATGATAAGGTGTTGGAGGATCTTCTTGGTCAGTCAGAGGAGCACAAGAAGAAAAAGAAGGGAGAATAG 429 0.5035 MEENQKGKQGKEEVRYRGVRRRPWGKYAAEIRDPSKQGSRLWLGTFDTAEEAARAYDRAAFNLRGHLAILNFPSEYYSQIRGSPPYPPHLAPPSSSSSHGGGSTSSSGAYHRPVFEIPCLDDKVLEDLLGQSEEHKKKKKGE 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02468 142 SMART rav1_2 15 79 IPR001471 GO:0003700|GO:0006355
Vimu3g02468 142 Gene3D AP2/ERF domain 14 74 IPR036955 GO:0003700|GO:0006355
Vimu3g02468 142 FunFam Ethylene-responsive transcription factor 2 14 75 - -
Vimu3g02468 142 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Vimu3g02468 142 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Vimu3g02468 142 MobiDBLite consensus disorder prediction 81 110 - -
Vimu3g02468 142 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677
Vimu3g02468 142 CDD AP2 15 73 IPR001471 GO:0003700|GO:0006355
Vimu3g02468 142 ProSiteProfiles AP2/ERF domain profile. 15 73 IPR001471 GO:0003700|GO:0006355
Vimu3g02468 142 MobiDBLite consensus disorder prediction 93 110 - -
Vimu3g02468 142 Pfam AP2 domain 15 66 IPR001471 GO:0003700|GO:0006355
Vimu3g02468 142 PANTHER DNA-BINDING DOMAIN 7 111 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02468 Vimu-Chr3 39176005 39176778 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02468 13 137 AP2-EREBP Transcription Factor Family AT3G23230 68.000 7.26e-48 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu3g02468 AP2 5.3e-17 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02468 - - gmx:100776376 206.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02468 3 39176005 39176778 Vimu3g02468 3 39176005 39176778 ECH