Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02466 ATGGATATGGATTCCACCTCCTTCTTCAATTCACCCTCTTCCGATTTCTCCTCAGAATCTTCCTCTCCGGAGGCTTTCTCCTGGGAGGGCTACCTCCCCTTCAACGAGAACGACCCGGAGGAGATGCTCCTCTACGGCATGATCACCGGCGCCACCACAGTCGAGCGCGCCGCCGACCGAGCCGGCTCTGAGGAGAGTGAGGCGGTGCAAAAGGAGAAGTCCTACCGCGGAGTGCGGCGGCGCCCGTGGGGGAAGTTTGCGGCGGAGATTAGGGACTCCACACGGCACGGGATGAGGGTGTGGCTTGGGACATTCGACAGCGCGGAAGCCGCGGCTTTGGCTTACGACCAAGCGGCGTTTTCCATGCGTGGCCCCGCCGCGATTCTGAACTTCCCCGTTGATATCGTTAGAGAATCGCTGAGGGAGATGAACTACACGGTAGACAGCAATGAAGAAGGGTGCTCCCCTGTTGTCGCTCTCAAGAGGAAACACTCGTTGCGGAGGAAAATTGGTGTGAAGAAAAACAACAAACAGAGTAGCGTAGACAATGCGGTCGTGTTTGAAGACCTTGGTCCTGACTACTTGGAACAGTTGTTGATGTCCTCTGATCGTATTCCCTCCTCCTTCTGA 630 0.5651 MDMDSTSFFNSPSSDFSSESSSPEAFSWEGYLPFNENDPEEMLLYGMITGATTVERAADRAGSEESEAVQKEKSYRGVRRRPWGKFAAEIRDSTRHGMRVWLGTFDSAEAAALAYDQAAFSMRGPAAILNFPVDIVRESLREMNYTVDSNEEGCSPVVALKRKHSLRRKIGVKKNNKQSSVDNAVVFEDLGPDYLEQLLMSSDRIPSSF 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02466 209 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Vimu3g02466 209 PRINTS Ethylene responsive element binding protein signature 98 114 IPR001471 GO:0003700|GO:0006355
Vimu3g02466 209 MobiDBLite consensus disorder prediction 1 33 - -
Vimu3g02466 209 CDD AP2 73 134 IPR001471 GO:0003700|GO:0006355
Vimu3g02466 209 FunFam Ethylene-responsive transcription factor 2 73 133 - -
Vimu3g02466 209 ProSiteProfiles AP2/ERF domain profile. 74 132 IPR001471 GO:0003700|GO:0006355
Vimu3g02466 209 SMART rav1_2 74 138 IPR001471 GO:0003700|GO:0006355
Vimu3g02466 209 Pfam AP2 domain 74 124 IPR001471 GO:0003700|GO:0006355
Vimu3g02466 209 SUPERFAMILY DNA-binding domain 74 134 IPR016177 GO:0003677
Vimu3g02466 209 Gene3D AP2/ERF domain 73 134 IPR036955 GO:0003700|GO:0006355
Vimu3g02466 209 MobiDBLite consensus disorder prediction 1 25 - -
Vimu3g02466 209 PANTHER DNA-BINDING DOMAIN 29 200 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02466 Vimu-Chr3 39142721 39143350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02466 32 203 AP2-EREBP Transcription Factor Family AT3G23240 61.326 3.07e-71 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu3g02466 AP2 5.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02466 K14516 - gmx:100790598 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01628 2 11555123 11555874 Vimu3g02466 3 39142721 39143350 ECH
Vimu6g02728 6 23831912 23832430 Vimu3g02466 3 39142721 39143350 ECH
Vimu3g01304 3 23123344 23123856 Vimu3g02466 3 39142721 39143350 ECH
Vimu3g02466 3 39142721 39143350 Vimu3g02466 3 39142721 39143350 ECH