Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02462 ATGGAACGTGCGGTTCTTGATGGTATCATCAATAGGCTGCTCGAAGTCAGAAACAGGCCTGGCAAACAGGTCCAACTTTCTGAGCCTGAAATCAAGCAGCTTTGTCTTGTCTCCAGGGATATCTTCTCCAACCAGCCCAACCTCTTGGAACTCGAGGCACCCCTCAAGATCTGTGGAGATATCCATGGTCAATATTCTGACCTTCTGCGACTTTTTGACTACGGTGGATTGCCTCCTCGTTCTAATTACTTATTTTTAGGGGACTATGTTGATCGTGGGAAGCAAAGCTTGGAGACTATATGTCTCCTTCTGGCTTATAAAATAAAATATCCTAATAACTTCTTTCTTCTGAGGGGCAACCATGAATGTGCTTCTATAAACCGAATCTATGGATTTTATGATGAGTGTAAACGAAGATTCAATGTGAGGCTTTGGAAAGTGTTCACAGAATGTTTCAACTGCTTGCCGGTGGCAGCTCTGATTGATGAAAAAATACTCTGCATGCATGGTGGACTCTCTCCTGACTTACACAATTTCAATCAGATAAAGAATTTGCCGCGTCCTTCTGAAGTACCTGAAGCTGGTCTACTATGTGACCTCCTTTGGTCTGATCCTAGCAGTGACATTCGGGGTTGGGGAGAAAACGAACGTGGAGTTTCCTATACTTTTGGTGTTGACAGGGTCACTGAATTCCTTCACAAGCATGATCTTGATTTGATTTGCAGGGCCCATCAGGTTGTGGAAGACGGATATGAATTCTTTGCTGACAGACAACTTGTGACTATCTTCTCGGCTCCTAATTACTGTGGAGAGTTTGACAATGCTGGTGCAATGATGACCGTTGATGAGTCACTCGTCTGCTCTTTTCTAATATTGAAGCCTGTAGATAAAAAGCCCAATAAGTTTCGCTTTGGGAGCACAACTACAGTTAAACCTACTACTCCAACAAAAGCTAAGGTATTTTGA 966 0.4317 MERAVLDGIINRLLEVRNRPGKQVQLSEPEIKQLCLVSRDIFSNQPNLLELEAPLKICGDIHGQYSDLLRLFDYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPNNFFLLRGNHECASINRIYGFYDECKRRFNVRLWKVFTECFNCLPVAALIDEKILCMHGGLSPDLHNFNQIKNLPRPSEVPEAGLLCDLLWSDPSSDIRGWGENERGVSYTFGVDRVTEFLHKHDLDLICRAHQVVEDGYEFFADRQLVTIFSAPNYCGEFDNAGAMMTVDESLVCSFLILKPVDKKPNKFRFGSTTTVKPTTPTKAKVF 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02462 321 SUPERFAMILY Metallo-dependent phosphatases 16 302 IPR029052 -
Vimu3g02462 321 FunFam Serine/threonine-protein phosphatase 1 303 - -
Vimu3g02462 321 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 9 299 - -
Vimu3g02462 321 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Vimu3g02462 321 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Vimu3g02462 321 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Vimu3g02462 321 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Vimu3g02462 321 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Vimu3g02462 321 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Vimu3g02462 321 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Vimu3g02462 321 SMART pp2a_7 26 296 IPR006186 GO:0016787
Vimu3g02462 321 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Vimu3g02462 321 CDD MPP_PP1_PPKL 5 294 - -
Vimu3g02462 321 Pfam Calcineurin-like phosphoesterase 56 246 IPR004843 GO:0016787
Vimu3g02462 321 Gene3D - 1 305 IPR029052 -
Vimu3g02462 321 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02462 Vimu-Chr3 39116059 39119036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02462 33 239 Calmodulin-binding Proteins AT5G63870 31.579 1.43e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02462 K06269 - gmx:100791655 590.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01629 2 11556774 11560006 Vimu3g02462 3 39116059 39119036 ECH
Vimu3g02462 3 39116059 39119036 Vimu3g02462 3 39116059 39119036 ECH