Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02460 ATGGGTGGGCAATCTCTGCATGTGCTTAATGCACTGGATGTTGCTAAGACACAATGGTATCATTTCACTGCAATTGTGATTGCTGGAATGGGTTTCTTCACTGATTCTTATGACCTGTTCTGCATATCCCTCGTCACCAAATTACTTGGCCGCATATACTATACTGTAGGCCATGATAAGCCTGGCTCTTTGCCAGCAAATGTTTCAGCTGCCATCAATGGTGTCGCATTCTGTGGATCCCTTGCAGGCCAACTTTTCTTTGGGTGGCTTGGTGACAAAATGGGAAGGAAGCGTGTCTACGGGATGACCCTTATGCTCATGGTCGTAAGCTCAATTGCTTCTGGTCTTTCCTTTGGTAAAGACCCTAAAGCTGTCATGGCTACCCTTTGTTTCTTCCGCTTCTGGCTTGGATTTGGAATTGGTGGAGACTACCCTCTTTCCGCCACCATCATGGCTGAGTATGCCAACAAGAAGACTCGTGGAGCGTTCATAGCTGCTGTTTTTGCCATGCAAGGTTTTGGAATTTTGGCTGGTGGAGTGGTTGCAATAGTAGTGTCAGCTGCTTTCGGTGCCCTCTATCCCGCTCCAACATTCCAGGTCAACCCACTTCTGTCCACAGTGCCACAAGCTGATTACGTTTGGAGGATAATCTTGATGTTTGGTGCAATCCCTGCTGTGATCACATACTATTGGCGCATGAAAATGCCCGAGACTGCGAGATACACTGCCTTGGTTGCCAAGAATACGAGGCAAGCTACTGCAGATATGTCAAAGGTGTTGCAGGTTGAGATAGAAGCTGAACCAGAGAAAGTTGAGGAATTGGACGGAAGAAGAGGAAGGGGGAATGAGTTTGGCCTGTTCACAAAAGAGTTCCTTATACGCCATGGACTTCACCTTGTTGGAACAGCCAGTACTTGGTTCCTGTTGGACATTGCCTATTACAGTCAGAATCTTTTCCAGAAAGACATTTTCAGTACTATTGGTTGGATTCCTCCAGCAAAAACCATGAATGCCATTCAAGAGGTTTACAAAATTGCTAGAGCACAGACCCTCATAGCTCTTTGCAGTACTGTCCCTGGTTACTGGTTCACAGTGGCACTCATTGATAAGATGGGCAGGTTTACAATTCAGTTGATGGGATTTTTCTTTATGACCGTCTTCATGCTTGCCTTAGCCATTCCATACCACCACTGGACCGTGAGCGGCAACCAAATTGGGTTTGTTGTCCTCTATTCATTGACCTTCTTCTTTGCCAATTTTGGTCCAAATGCCACAACATTCGTGGTGCCAGCAGAGATTTTCCCTGCAAGACTAAGGTCAACATGTCATGGCATATCGGCTGCAGCTGGCAAAGCTGGGGCAATGGTAGGGGCTTTTGGCTTCCTCTATGCTCAAAACGCCATTGGACTAAGAAATACACTTCTTATTTTGTCTGCCATTAACTTCTTGGGGTTTGGCTTTACGTTTCTGATTCCTGAATCTAAAGGAAAATCGCTGGAGGAGATGTCTGGTGAAGCTGAACAAAACAAAATTCCTACAAGAGAATCAGCAATGGAAGCCGGTCTTGAAGTTAGAACATCTGTGTAA 1587 0.4581 MGGQSLHVLNALDVAKTQWYHFTAIVIAGMGFFTDSYDLFCISLVTKLLGRIYYTVGHDKPGSLPANVSAAINGVAFCGSLAGQLFFGWLGDKMGRKRVYGMTLMLMVVSSIASGLSFGKDPKAVMATLCFFRFWLGFGIGGDYPLSATIMAEYANKKTRGAFIAAVFAMQGFGILAGGVVAIVVSAAFGALYPAPTFQVNPLLSTVPQADYVWRIILMFGAIPAVITYYWRMKMPETARYTALVAKNTRQATADMSKVLQVEIEAEPEKVEELDGRRGRGNEFGLFTKEFLIRHGLHLVGTASTWFLLDIAYYSQNLFQKDIFSTIGWIPPAKTMNAIQEVYKIARAQTLIALCSTVPGYWFTVALIDKMGRFTIQLMGFFFMTVFMLALAIPYHHWTVSGNQIGFVVLYSLTFFFANFGPNATTFVVPAEIFPARLRSTCHGISAAAGKAGAMVGAFGFLYAQNAIGLRNTLLILSAINFLGFGFTFLIPESKGKSLEEMSGEAEQNKIPTRESAMEAGLEVRTSV 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02460 528 MobiDBLite consensus disorder prediction 501 528 - -
Vimu3g02460 528 CDD MFS_PhT 25 495 - -
Vimu3g02460 528 SUPERFAMILY MFS general substrate transporter 12 503 IPR036259 -
Vimu3g02460 528 NCBIfam phosphate:H+ symporter 11 505 IPR004738 GO:0005315|GO:0006817|GO:0016020
Vimu3g02460 528 Pfam Sugar (and other) transporter 25 503 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vimu3g02460 528 ProSiteProfiles Major facilitator superfamily (MFS) profile. 24 496 IPR020846 GO:0022857
Vimu3g02460 528 FunFam Inorganic phosphate transporter 1-6 20 517 - -
Vimu3g02460 528 Gene3D MFS general substrate transporter like domains 279 520 IPR036259 -
Vimu3g02460 528 Gene3D MFS general substrate transporter like domains 20 265 IPR036259 -
Vimu3g02460 528 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 21 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02460 Vimu-Chr3 39096428 39098014 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02460 1 510 Inorganic Solute Cotransporters AT3G54700 77.481 0.0 835
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02460 K08176 - gmx:100792711 922.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02460 3 39096428 39098014 Vimu3g02460 3 39096428 39098014 ECH