Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02458 ATGAGTAAATACCTCCAGCAAGAGTACGTAGTTTCCGAGGAGATCGGCCGGGGAAGATTCGGTACCGTTTACCGATGCTCGTCGGCAGACTCCGGCGAGTTCTACGCCGTTAAATCCATCGACAAGGTAGCCATAAGTGCCAGCGGAGACTCGCTGGACTCCCGATGCCTCTTTACCGAGGCCAAGATCGTTCAGCTGCTCTCCCCTCACCCTCACATAGTCACTCTTTACAGTCTCTACAAAGACGAAACGCACCTCCACATGATTCTCGACCTGTGTTACGAACCCACGTTTCATCACCAGGTCACGCCGGAACGCGAAGCTGCTTTAGTGATGTGGCAGCTCATGAAAGGCGTGGTCCACTGCCACCGTCTCGGCGTGGCCCACCGAGACATAAAGCCCGACAACATTCTTTTCGACAAGGAGAATCGGCTGAAGCTAGCCGATTTTGGCTCGGCTGAGACTTTCAAAGAGGGCGAGTCCATGAGGGGGGTGGTGGGGACACCGCATTACGTGGCGCCGGAGGTCCTCACCGGAAGGGATTATAACGAGAAAGTTGACGTGTGGAGTTGTGGTGTGGTTTTGTATCAAATGCTGGCGGGGTTTTTGCCCTTTGGAGGTGATTCTCCTGTGGAGATTTTTGAGGCTGTTATGCACTCCAGTTTGAGACTCCCAACCCGGCTTTTCTCTTCTGTTTCACCTGCCGCCAAGGATCTACTTCGTAGAATGTTGTGCAGAGAAGTCTCTAGAAGGTTCTCTGCTGAACAAGTTCTGAGACACGGATGGTTTAGCATTATTGAACAGAGTGACTGA 813 0.5252 MSKYLQQEYVVSEEIGRGRFGTVYRCSSADSGEFYAVKSIDKVAISASGDSLDSRCLFTEAKIVQLLSPHPHIVTLYSLYKDETHLHMILDLCYEPTFHHQVTPEREAALVMWQLMKGVVHCHRLGVAHRDIKPDNILFDKENRLKLADFGSAETFKEGESMRGVVGTPHYVAPEVLTGRDYNEKVDVWSCGVVLYQMLAGFLPFGGDSPVEIFEAVMHSSLRLPTRLFSSVSPAAKDLLRRMLCREVSRRFSAEQVLRHGWFSIIEQSD 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02458 270 SMART serkin_6 9 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02458 270 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Vimu3g02458 270 SUPERFAMILY Protein kinase-like (PK-like) 4 264 IPR011009 -
Vimu3g02458 270 FunFam Maternal embryonic leucine zipper kinase 2 268 - -
Vimu3g02458 270 Pfam Protein kinase domain 9 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02458 270 PANTHER SERINE/THREONINE-PROTEIN KINASE 5 263 - -
Vimu3g02458 270 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vimu3g02458 270 ProSiteProfiles Protein kinase domain profile. 9 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02458 270 CDD STKc_CAMK 9 262 - -
Vimu3g02458 270 Gene3D Phosphorylase Kinase; domain 1 1 93 - -
Vimu3g02458 270 Gene3D Transferase(Phosphotransferase) domain 1 96 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02458 Vimu-Chr3 39083420 39084529 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02458 9 263 EF-hand Containing Proteins AT1G50700 38.023 3.49e-59 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vimu3g02458 Pkinase 3.9e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02458 K08794 - gmx:547731 456.062