Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02437 ATGAATTCAGAGAAGCCAGTCAGCCCTGAGAATTTAAGTGATGAAAATGATCAAGAAGAAGCACAAGATGACACTGGTGGAACTAAACGCTCTTATGAGTGCACATTCTGCAAAAGAGGTTTCACAAACGCTCAAGCTTTGGGGGGTCATATGAATATCCATAGGAAAGACAGGGCCAAGGCCAAGCAATTCACACTTGACGCTTCACCTTCAATTAAAACTTTGAACCAACAACACGCAAGGCCTAATTACTCCGTTTTGGAATCTCAGAGGAACTGTGACAAACACTTTCATCCGCCACCACCTGCAAGTGCCTTTTATTATGAGTTTTATGAGCCAAGGTCTCGGTCTTTGAGTTTGAACCAAGAGCTTCGTGGTGCCAACCTGAGTCTCCAAATTGGTCCAAGTCATCATGTGGGTGATGATATTCATCAAGCGAGAGGAAACCAGAAAGATAGTGAAGTGGACTTGGAGCTAAGACTTGGCCATCATCCATACTGA 501 0.4391 MNSEKPVSPENLSDENDQEEAQDDTGGTKRSYECTFCKRGFTNAQALGGHMNIHRKDRAKAKQFTLDASPSIKTLNQQHARPNYSVLESQRNCDKHFHPPPPASAFYYEFYEPRSRSLSLNQELRGANLSLQIGPSHHVGDDIHQARGNQKDSEVDLELRLGHHPY 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02437 166 Pfam C2H2-type zinc finger 32 56 - -
Vimu3g02437 166 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Vimu3g02437 166 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Vimu3g02437 166 SUPERFAMILY beta-beta-alpha zinc fingers 29 59 IPR036236 -
Vimu3g02437 166 PANTHER OS07G0101800 PROTEIN 12 164 - -
Vimu3g02437 166 MobiDBLite consensus disorder prediction 1 30 - -
Vimu3g02437 166 Gene3D Classic Zinc Finger 15 90 - -
Vimu3g02437 166 SMART c2h2final6 32 54 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02437 Vimu-Chr3 38879821 38880366 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02437 23 162 C2H2 Transcription Factor Family AT3G09290 36.129 6.92e-18 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu3g02437 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02437 - - vun:114191365 310.842