Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02434 TTGTATGATGATGTTTCAGGAAACCGAGTGGAATGTTTCAGTATGAGAGCTAAGAGTTTGATAAGTAAAAAGCAGATAAGCCTAAGATTGAGAAAAATGATTAAGTGTATATGCTCTGGGGAGCAGTTAAAGGTGGATGAATTAGGCTACTCATCGGAGTCCTTAGCAACCAGAGATTATTCAGCAAGTGGTGGCTTTTCTCGTCCTGGTGAAAACGACACAAAGATTGACAATACCAACATTGAAGAAGCAGAGTCTTCTCTTCGTGAAAGTGGTTATTTAAACTATGAGGAAGCTAGAGCTTTGCTTGGAAGACTTGAGTATCAGAAAGGCAATGTCGAAGCTGCACTTCATGTGTTTGAAGGAATAGATATTGCTACTGTTGTTCCCAAGATTAAAGTTTCTATATCTAGAAGATGTGAGCCTAATAGACGCCGTTCGCAAAGTGATGCTCAGCCTCCTATGTCAATGCATGCTGTTACTTTAATTCTTGAAGCTGTCTTTCTCAAGGCCAAATCGTTGCAGGCTCTAGGAAGGTTTCAAGATGCTGCCCAGTCATGCAAGACGATTTTAGACACTGTTGAATCAGCTTTACCAGAAGGGTGGCCTGAAAACTTAATTTCGGACTGTAAACTGCAAGAGACAGTGGCAAATGCTGTGGAACTGCTTCCAGAGTTGTGGAAGCTTGCAGGCTCTCCTCAAGACGTTATCTCATCGTTTAGGAGGGCCCTTCTTTATCATTGGAATCTTGGCAGTAAAGCCAGCGCAAGAATACAAAAGGAATTTGCTTTTTTTCTTCTGTATAGTGGTTGTGAAGCTAGCCCTCCTGCTCTCCGCTCTCAGTTGGATGGTTCCTTTGTGCCAAGAAGCAACTTAGAAGAGGCTGTTCTTCTGCTTCTGATTTTGCTGAGAAAATTTATTCTTGGATACATTGAATGGGACCCTTCGTTAATTGATCACCTTTCGTTTGCTCTAAGTGTTTCTGGGGAATTCATGACTCTAGCTCAGCAGGTTGAGGAATTGCTTCCTGAAAACATGGACAGAAAAGAAAGATTCTATACTCTAGCTCTTTGTTACTGTGGAGAAGGTGAACATACGACTGCTTTGGATCTTCTAAGGAACTCTCTGAATCACAGAGAGAACTCAGACTGCATAAAGGAGCTACTTCTAGCTTCAAAAATTTGTGCAGACAAGAAGATTTACAATGAAGAAGGAATCAGATATTCTTTCAAAGCCATTTCTCAGCTGAATGGAAAGTGCATGCAGATGGCAGCTATTGTAAATTGCTTTCTAGGCGTTCTACTGTCATCAAAATCCAGGTCAGCCGCTTCTGAATCAGAGAAGATTTTTTTGCAGTCTGAAGCACTCAGTGCTCTAAAGGATTCGGAGAGAACGATGAGGGAGAGCGATCCTTATATTGTCCTTCATCTTTGTCTAGAATATGCTGAACAGAGGAAGTTGAGCACTGCTATTGATCATGCAAAGAAACTGATTAAGCTTGAGGGTGGATCTAGTGTCAGTGCATATATTCTTTTAGCGCGGATTTTATCTGCTCAACGAAAGTTTGAAGATGCAGAGCTTGTTATCGATGCTGCTCTAGATCAAAGTGGGAAATGGGATCAAGGAGAATTGTTGAGAACTAAAGCTAAACTAAGGATTGCACAGGGAAAATTAAAGAATGCGGTGGAGACGTATACTTTTCTTCTTGCTGTTCTTCAGGTCCAAAATAAAAGTTTAGGCACGGCATGTAAGAAGAGTAAGGGAAACCGTGACAGAAGACTGGAAATGGAAATATGGCATGATTTAGCCAATGTGTATATGGCCTTATCACAGTGGCAGGATGCTGAAGTTTGTCTGGCAAAATCTGAGGCTATTAATCCCTATTCTGCTTCTAGATGGCACACAAAAGGTTTACTTTTTGAAGCCAGAGGTCTTCATCCAGAGGCTCTGAAATCATTTAGGAAAGCATTAGATATTGATCCCAACCATGTGCCAAGTTTGATATCTACAGCGTGTGTACTTAGACAACTTGGTGGTCAATCATCTTCAATAGTCAGAAGCCTACTCACTGATGCGTTGCGCCTTGACAGAACAAACCCATCTGCTTGGTACAATCTTGGACTGTTCTACAGAGATGATCTGGGGACATCGGCAATGGAAGCCGTTGAATGCTTTGAAGCTGCAGCTTTTCTTGAAGAATCTTCTCCCATCGAACCCTTTAGATAG 2226 0.4164 MYDDVSGNRVECFSMRAKSLISKKQISLRLRKMIKCICSGEQLKVDELGYSSESLATRDYSASGGFSRPGENDTKIDNTNIEEAESSLRESGYLNYEEARALLGRLEYQKGNVEAALHVFEGIDIATVVPKIKVSISRRCEPNRRRSQSDAQPPMSMHAVTLILEAVFLKAKSLQALGRFQDAAQSCKTILDTVESALPEGWPENLISDCKLQETVANAVELLPELWKLAGSPQDVISSFRRALLYHWNLGSKASARIQKEFAFFLLYSGCEASPPALRSQLDGSFVPRSNLEEAVLLLLILLRKFILGYIEWDPSLIDHLSFALSVSGEFMTLAQQVEELLPENMDRKERFYTLALCYCGEGEHTTALDLLRNSLNHRENSDCIKELLLASKICADKKIYNEEGIRYSFKAISQLNGKCMQMAAIVNCFLGVLLSSKSRSAASESEKIFLQSEALSALKDSERTMRESDPYIVLHLCLEYAEQRKLSTAIDHAKKLIKLEGGSSVSAYILLARILSAQRKFEDAELVIDAALDQSGKWDQGELLRTKAKLRIAQGKLKNAVETYTFLLAVLQVQNKSLGTACKKSKGNRDRRLEMEIWHDLANVYMALSQWQDAEVCLAKSEAINPYSASRWHTKGLLFEARGLHPEALKSFRKALDIDPNHVPSLISTACVLRQLGGQSSSIVRSLLTDALRLDRTNPSAWYNLGLFYRDDLGTSAMEAVECFEAAAFLEESSPIEPFR 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02434 741 PANTHER PROTEIN NPG1 34 741 IPR043376 -
Vimu3g02434 741 Pfam Tetratricopeptide repeat 631 663 IPR019734 GO:0005515
Vimu3g02434 741 SMART tpr_5 164 197 IPR019734 GO:0005515
Vimu3g02434 741 SMART tpr_5 471 504 IPR019734 GO:0005515
Vimu3g02434 741 SMART tpr_5 349 382 IPR019734 GO:0005515
Vimu3g02434 741 SMART tpr_5 596 629 IPR019734 GO:0005515
Vimu3g02434 741 SMART tpr_5 506 539 IPR019734 GO:0005515
Vimu3g02434 741 SMART tpr_5 630 663 IPR019734 GO:0005515
Vimu3g02434 741 Pfam Tetratricopeptide repeat 480 535 - -
Vimu3g02434 741 Gene3D Tetratricopeptide repeat domain 78 577 IPR011990 GO:0005515
Vimu3g02434 741 Gene3D Tetratricopeptide repeat domain 578 738 IPR011990 GO:0005515
Vimu3g02434 741 ProSiteProfiles TPR repeat profile. 630 663 IPR019734 GO:0005515
Vimu3g02434 741 SUPERFAMILY TPR-like 490 712 IPR011990 GO:0005515
Vimu3g02434 741 SUPERFAMILY TPR-like 165 383 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02434 Vimu-Chr3 38822589 38825767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02434 30 741 Calmodulin-binding Proteins AT4G28600 53.224 0.0 715
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02434 K21843 - gmx:100789469 1263.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02434 3 38822589 38825767 Vimu3g02434 3 38822589 38825767 ECH