Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02419 ATGAGGTTTGGGCCTGAGGTATGCACTGAGGCCCACGTTTACGAGTGTTCCACCACCCACCCATCCACCGTCTCTGCTTCTCTGCAATTGAAGCCGAAAATGCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCTCGTCAACTACGGCAAGGAATATGGGAGACTCGTCGTCATCGTCGACGTCATCGACCAGAACAGAGCACTTGTCGATGCCCCAGATATGGTGAGAACTCAAGTCAATTTCAAGAGGCTTTCCCTAACCGATATTAAGATTGACATTAAGAGGGTCCCCAAGAAGAAAGATCTTGTTAAAGCCATGGAGGCTGCTGATGTTAAGAACAAATGGGAAAACAGCTCATGGGGCAGGAAACTCATTGTCAAAAAGAGAAGGGCAGCCCTCACTGACTTCGACAGGTTCAAGCTAATGTTGGCCAAGATCAAGAGGGCAGCTGTTGTAAGGCAAGAACTCTCTAAGCTGAAAAAGAGCGCGTAG 498 0.488 MRFGPEVCTEAHVYECSTTHPSTVSASLQLKPKMPFKRYVEIGRVALVNYGKEYGRLVVIVDVIDQNRALVDAPDMVRTQVNFKRLSLTDIKIDIKRVPKKKDLVKAMEAADVKNKWENSSWGRKLIVKKRRAALTDFDRFKLMLAKIKRAAVVRQELSKLKKSA 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02419 165 CDD KOW_RPL14 40 112 IPR041985 -
Vimu3g02419 165 SUPERFAMILY Translation proteins SH3-like domain 38 126 IPR008991 -
Vimu3g02419 165 PANTHER 60S RIBOSOMAL PROTEIN L14 34 164 IPR039660 GO:0003723|GO:0003735
Vimu3g02419 165 FunFam 60S ribosomal protein L14-1 34 117 - -
Vimu3g02419 165 Pfam Ribosomal protein L14 78 150 IPR002784 GO:0003735|GO:0005840|GO:0006412
Vimu3g02419 165 Gene3D - 34 117 IPR014722 -
Vimu3g02419 165 Gene3D - 125 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02419 Vimu-Chr3 38723456 38724476 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02419 34 164 Cytoplasmic Ribosomal Protein Gene Family AT4G27090 81.679 1.09e-74 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02419 K02875 - gmx:100499889 241.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02419 3 38723456 38724476 Vimu3g02419 3 38723456 38724476 ECH