Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02418 ATGGGATTCTATCTTAATCTCAAATTCAAGGCCTTTAGGTTGAAACGGTTTCTGCTTGGACATGGACGCAGAAAAAGAAAGCAGAAGATGGCAAAAAAGCCCTCATGGATGATGCCAATGACATATGGTTATCATGTGGTGGAACATAATATGAGCAGAGATGATTCTGATAACTCAGACTTTGATTCAGTTGTGGCACAGAGAGAGGAAATGAATCAAACAGAGTTGTGGTATTTTGGAATCTTTGATGCACTGATTGGAGACAGGGTTAGCAAGTACATGCAGTCTCATTTCTTTGACAAGAAGCTTCAAGAGACTCGTTTAAGCAGTAAAAGTAAGGAAGCTCTGAAGAGAGCTTACCATGGCGTAAGAGCAAAGATTCGAGAGGAATACAAATTAGAGGAGACATGTAGAATGGGTTCAGCATCTGTTATACTGATCAATGGAGAAAAACTTGTAATAGCCAACATGGGGAATTACAGAACTGTTGTGTGCAGAGATGGAATAGCTCATCAGACAACTGGCACATACCGACGATTAGAAAAAATGCACTGGTCTCGCCGACTCTTTGCAGGATGCATGCTGGGACGTCAATCAGGAAATGCAGCAGGTGCAAAACATTCTAGAGGCTCCGACTTTGTGATTAAAAGTGAAGTGCTTGATTCTGGTACTGAATTTTTGATATTAGCAAGCAATGGCATATGGGAGGTGATGAAAAACCAAGAGGCTGTGAATCTGATCAGTCACATAGAGGATCCACAAGAAGCAGCTGAATGCTTGGCAAAGGAAGCTTTAATTAGGATGACCAAAAGCAACATCTCATGCTTAATCATTCGTTTTGACTGA 846 0.4113 MGFYLNLKFKAFRLKRFLLGHGRRKRKQKMAKKPSWMMPMTYGYHVVEHNMSRDDSDNSDFDSVVAQREEMNQTELWYFGIFDALIGDRVSKYMQSHFFDKKLQETRLSSKSKEALKRAYHGVRAKIREEYKLEETCRMGSASVILINGEKLVIANMGNYRTVVCRDGIAHQTTGTYRRLEKMHWSRRLFAGCMLGRQSGNAAGAKHSRGSDFVIKSEVLDSGTEFLILASNGIWEVMKNQEAVNLISHIEDPQEAAECLAKEALIRMTKSNISCLIIRFD 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02418 281 SMART PP2C_4 51 278 IPR001932 -
Vimu3g02418 281 CDD PP2Cc 78 280 IPR001932 -
Vimu3g02418 281 Gene3D - 44 281 IPR036457 -
Vimu3g02418 281 PANTHER PROTEIN PHOSPHATASE 33 279 IPR015655 GO:0004722|GO:0006470
Vimu3g02418 281 SUPERFAMILY PP2C-like 36 281 IPR036457 -
Vimu3g02418 281 Pfam Protein phosphatase 2C 220 273 IPR001932 -
Vimu3g02418 281 Pfam Protein phosphatase 2C 66 173 IPR001932 -
Vimu3g02418 281 ProSiteProfiles PPM-type phosphatase domain profile. 58 280 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02418 Vimu-Chr3 38716297 38719743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02418 1 280 PP2C-type Phosphatase Gene Family AT3G23360 45.775 1.70e-78 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02418 K19704 - gmx:100785227 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02418 3 38716297 38719743 Vimu3g02418 3 38716297 38719743 ECH