Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02409 ATGGATCATGTTATTGGTGGAAAATTCAAGCTTGGTAGGAAGATAGGGAGTGGATCGTTTGGCGAGCTTTACCTAGGTGTTAATGTACAAAGTGGGGAGGAAGTCGCTGTTAAGCTAGAATCTGTGAAGACCAAGCATCCCCAGCTTCACTATGAGTCTAAATTGTATATGCTTCTCCAAGGGGGAACTGGTATACCCCATCTAAAATGGTTTGGAATTGAGGGTGACTACAATGTCATGGCTATTGACCTCCTTGGGCCTAGTCTTGAAGACTTGTTTAACTATTGTAATAGGAAATTATCTCTGAAAACAGTTCTGATGCTGGCAGATCAGCTAATAAACAGAGTTGAGTACATGCACTCCCGGGGTTTTCTGCATCGAGATATAAAGCCTGACAACTTTTTAATGGGTTTAGGCCGGAAGGCAAATCAGGTATACATAATTGATTATGGTCTTGCAAAAAAGTACCGGGACCTTCAAACACATAAGCATATACCGTACAGGGAAAACAAAAACCTCACTGGAACTGCTCGATATGCAAGTGTTAATACTCATTTGGGAGTTGAACAAAGCAGAAGAGATGATCTAGAATCTCTTGGTTATGTGCTCATGTACTTTTTGAGAGGAAGTCTCCCGTGGCAAGGCTTGAAAGCTGGAACTAAAAAGCAAAAGTATGACAAGATAAGTGAAAAGAAGATGCTTACTCCAATAGAGGTCTTATGCAAGTCCTATCCATCGGAATTCACATCATACTTCCACTATTGCCGATCATTGCGGTTTGAAGATAAGCCCGATTACTCTTATCTTAAGAGACTCTTTCGAGACCTATTCATCCGAGAAGGGTATCAGTTTGACTATGTATTTGATTGGACAATGTTGAAGTATCCACAAATTGGATCCAGCTCTAGAGCTCGACCTAGTGGGAAACCAGTCATAAACCCAGGGCAATCAGGAGAACGACCTTCAGTTATACCAGAGATTCGAGATAGATTCTCAGGTGCAGTTGAGGCATTTGCGAGGAGGAATGGCTCTGGACTTGGTTTACACGGTGATCATTCTAGGCATAAGTCTTCTGATGATGCGCCTTCTTCGTCTAAAGATGTGCAAGCTGATTCTGAGAGGCCTAGGAGTTCTTCTCGTAATGGCAGTTCTTCAAAGAAGCTTGTCTTGTCAAGCAGACCAAGCTCTTCTGGTGAGCCCAGTGAAAGCCGTGTTAGCCGACTGGTCTCAAGCAGTGGCAGACTATCAACAACTCAGAGACTTCAACCTGGTTCTGAGTCTAAAACGTCTCTAACTCGGACTTCGGGGACAAGACTTGGCCGTGATGATGCTCTCAGGAGCTTTGAACTCCTGTCACTTAGCACAGGGAAAAGGAAATGA 1380 0.4341 MDHVIGGKFKLGRKIGSGSFGELYLGVNVQSGEEVAVKLESVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGIEGDYNVMAIDLLGPSLEDLFNYCNRKLSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPIEVLCKSYPSEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTMLKYPQIGSSSRARPSGKPVINPGQSGERPSVIPEIRDRFSGAVEAFARRNGSGLGLHGDHSRHKSSDDAPSSSKDVQADSERPRSSSRNGSSSKKLVLSSRPSSSGEPSESRVSRLVSSSGRLSTTQRLQPGSESKTSLTRTSGTRLGRDDALRSFELLSLSTGKRK 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02409 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vimu3g02409 459 CDD STKc_CK1_delta_epsilon 8 282 - -
Vimu3g02409 459 MobiDBLite consensus disorder prediction 375 437 - -
Vimu3g02409 459 MobiDBLite consensus disorder prediction 342 440 - -
Vimu3g02409 459 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Vimu3g02409 459 PANTHER CASEIN KINASE-RELATED 9 392 - -
Vimu3g02409 459 MobiDBLite consensus disorder prediction 347 374 - -
Vimu3g02409 459 FunFam Putative Casein kinase I 1 85 - -
Vimu3g02409 459 SMART serkin_6 9 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02409 459 Gene3D Transferase(Phosphotransferase) domain 1 1 319 - -
Vimu3g02409 459 MobiDBLite consensus disorder prediction 299 324 - -
Vimu3g02409 459 Pfam Protein kinase domain 10 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02409 459 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vimu3g02409 459 FunFam Casein kinase 1-like protein 1 327 - -
Vimu3g02409 459 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02409 Vimu-Chr3 38645910 38651072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02409 8 213 MAP Kinase Kinase Kinase AT3G06030 25.463 1.72e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vimu3g02409 Pkinase 1.7e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02409 K08960 - qsu:112030604 785.023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02409 3 38645910 38651072 Vimu3g02409 3 38645910 38651072 ECH