Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02408 ATGGATAGGTGCTGGTTTAATAAACTAAAGCCAAAAGATAAAACACGGTCTTCAAAAAGCAAGGAAACTACGGGCATTGCAAAAGAAGGGTCGAAAACCCCAACCAATGAAGTAGCACCTTCAAATGTGACCAAACAGAAGGTTGCAGCTGCAAAGCAGTATATAGAAAACCATTATAAGAAACAAATGAAGGACTTGCAGGAGAGAAGGGAACGGCGTAATATGCTAGAGAAAAAGTTGGCAGATGCTGAAGTCTCTGAAGAAGAGCAGAACAATTTGCTTAAGTATTTTGAGAAAAAGGAGAGGGAATACATGCGCCTTAAGAGGCATAAAATGGGGGCTGATGATTTTGAGCCCTTGACTATGATTGGGAAGGGTGCATTTGGAGAGGTCAGAGTATGCCGAGAGAAGGCAACTGGTCATGTATATGCCATGAAGAAACTTAAGAAATCAGAAATGCTTCGCAGAGGCCAGGTGGAACATGTAAAAGCTGAGAGGAATCTACTTGCAGAAGTCGACAGCAATTGCATTGTAAAGCTTTATTGTTCCTTTCAAGATGAAGAGTTCTTATATCTCATAATGGAGTATCTGCCTGGTGGGGATATGATGACTTTGCTCATGCGGAAGGATATACTGACAGAAGATGAGGCCAGGTTCTATGTTGGGGAGACCGTCCTAGCCATAGAGTCAATTCATAAACATAATTACATTCATCGAGATATCAAGCCTGACAACTTGCTGCTAGACAGAAATGGTCACATGAAATTATCAGACTTTGGATTATGTAAACCACTAGATTGCAGTAATCTTCAGGAGAAGGACTTCTCTATTGGAAGCAACAGAAGTGGAGCCCTTCAGAGTGACGGACGCCCTTTGGCTCCTAAAAGAAGCCAACAGGAGCAACTCCAGCATTGGCAGAAAAATAGGCGAATGCTTGCCTATTCTACAGTTGGAACACCTGACTATATTGCCCCCGAAGTCCTTCTGAAGAAAGGATATGGCATGGAATGTGATTGGTGGTCTCTGGGAGCAATAATGTATGAAATGCTTGTGGGGTACCCGCCCTTTTATTCAGATGAACCAATGTTGACTTGTAGAAAGATAGTAAATTGGAGAAATTATTTAAAATTTCCTGAAGAAGTTAAACTTTCAGCAGAGGCCAAGGATCTTATTAGTAGACTCCTTTGTAATGTTGAGCAAAGGCTTGGAACGAAAGGGGCTGATGAAATAAAGGCTCACCCATGGTTCAAAGGTGTTGAATGGGACAAATTGTACCAAATTAAAGCTGCTTTTATTCCTGAGGTTAACGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAAGAGGTTGACAACCAAACTCAACCTTCCTCAAAATCAGGCCCATGGAGAAAGATGCTGTCGTCTAAAGATGTTAACTTTGTTGGGTACACATTTAAGAACTTTGAAATTGTAAATGATGATCAACTACCTGAAATTGCTGAATTGAAGAAGAAGAGCACAAAAACTAAGCGACCATCTATCAAGACCCTATTTGATGATGAATCAGCAACGGTTGCCAATCAACCTGCCCAAGGGAGCTTCTTAAAACTCTTACCTACTCAACGTGAAGTTCCAGTGAAGAGTGAATCTCAGTGA 1638 0.4096 MDRCWFNKLKPKDKTRSSKSKETTGIAKEGSKTPTNEVAPSNVTKQKVAAAKQYIENHYKKQMKDLQERRERRNMLEKKLADAEVSEEEQNNLLKYFEKKEREYMRLKRHKMGADDFEPLTMIGKGAFGEVRVCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEFLYLIMEYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRNGHMKLSDFGLCKPLDCSNLQEKDFSIGSNRSGALQSDGRPLAPKRSQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDEPMLTCRKIVNWRNYLKFPEEVKLSAEAKDLISRLLCNVEQRLGTKGADEIKAHPWFKGVEWDKLYQIKAAFIPEVNDELDTQNFEKFEEVDNQTQPSSKSGPWRKMLSSKDVNFVGYTFKNFEIVNDDQLPEIAELKKKSTKTKRPSIKTLFDDESATVANQPAQGSFLKLLPTQREVPVKSESQ 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02408 545 Coils Coil 59 93 - -
Vimu3g02408 545 CDD MobB_NDR_LATS-like 51 112 - -
Vimu3g02408 545 FunFam Non-specific serine/threonine protein kinase 201 268 - -
Vimu3g02408 545 ProSitePatterns Protein kinases ATP-binding region signature. 123 146 IPR017441 GO:0005524
Vimu3g02408 545 PANTHER SERINE/THREONINE-PROTEIN KINASE 28 468 - -
Vimu3g02408 545 SMART pkinase_C_6 417 481 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vimu3g02408 545 Pfam Protein kinase domain 119 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02408 545 Gene3D Transferase(Phosphotransferase) domain 1 315 434 - -
Vimu3g02408 545 Gene3D Transferase(Phosphotransferase) domain 1 201 266 - -
Vimu3g02408 545 FunFam Non-specific serine/threonine protein kinase 88 200 - -
Vimu3g02408 545 FunFam Non-specific serine/threonine protein kinase 315 434 - -
Vimu3g02408 545 ProSiteProfiles Protein kinase domain profile. 117 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02408 545 MobiDBLite consensus disorder prediction 1 26 - -
Vimu3g02408 545 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Vimu3g02408 545 Gene3D Phosphorylase Kinase; domain 1 435 445 - -
Vimu3g02408 545 Gene3D Phosphorylase Kinase; domain 1 115 200 - -
Vimu3g02408 545 Pfam Protein kinase C terminal domain 435 479 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vimu3g02408 545 MobiDBLite consensus disorder prediction 27 45 - -
Vimu3g02408 545 SUPERFAMILY Protein kinase-like (PK-like) 91 468 IPR011009 -
Vimu3g02408 545 CDD STKc_NDR_like 115 480 - -
Vimu3g02408 545 SMART serkin_6 117 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02408 545 MobiDBLite consensus disorder prediction 278 300 - -
Vimu3g02408 545 ProSiteProfiles AGC-kinase C-terminal domain profile. 417 489 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vimu3g02408 545 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02408 Vimu-Chr3 38637959 38643548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02408 3 543 AGC Kinase Gene Family AT3G23310 82.537 0.0 911
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vimu3g02408 Pkinase 6.6e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02408 K08790 - gmx:100783095 1061.21