Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02404 ATGAAAAGCACCGGTTCTTCTTTGAAAACCCTGCCACCAGGACTCCTTACATATATTCGCCAAGCTTGCCTTTCTATTGTCGCATTTTCCCTAAAAAGGCACAGTTACAAAGTGGTGGTAATGGTTTTGGATAGCCGTACACATCGATCGAGTGTGTGGGTTCACGACATGGAATTGAAGGCTTCAAAGTCCTTTGGGAAAAGGCATGAATATTGCTCCCGTAGCCCTTCCTATGGCAAAGAATTGAGTGAAGCGTTTGTGAAACGTAGGAAGGTGAATCAAGCATTGGTGACATTCAGGAACTTGGTCGATAAGCTAATGCATCAGTACAAAGTGTACGAACCTGAGAATCCTAGGGCCAAGAATAAGAATAAAGCTCTATTGGAAGCCACAATGACAATGAGAAGAGAACATCAATGGGAGAACACTCAACAGTGCGTGAGACATATACTAGGAATAGATGTGGGTGATATTTTTCAGTACTGGGTTGAACTCAATGTCATTGGCCTCCATAGGCAGTTTTGGAATGGAATTGATTATAAGATAATGGACAATAGCTTGTTAGCCATAAGCATTGTGGCAACAGATCGCTATGATAATGCTAGAAGATATAATGGTACATTGGTTTATGAAGGTCAAGGAGGAAATCCTACTGTTGGAGAAATTCTATTTTTCGACACCAAAAAACTAGAAGGAGGAAATTTGGCGTTGAAAAATAGCATGCAAGCTAGAAGTCCAATGAGAATTATATTGAAAGCTTGTGGAAAGTTTGATGGTGCATTCGATTACAGTAATTCTCATTGCTCATAA 810 0.4025 MKSTGSSLKTLPPGLLTYIRQACLSIVAFSLKRHSYKVVVMVLDSRTHRSSVWVHDMELKASKSFGKRHEYCSRSPSYGKELSEAFVKRRKVNQALVTFRNLVDKLMHQYKVYEPENPRAKNKNKALLEATMTMRREHQWENTQQCVRHILGIDVGDIFQYWVELNVIGLHRQFWNGIDYKIMDNSLLAISIVATDRYDNARRYNGTLVYEGQGGNPTVGEILFFDTKKLEGGNLALKNSMQARSPMRIILKACGKFDGAFDYSNSHCS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02404 269 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 82 251 - -
Vimu3g02404 269 SMART G9a_1 143 267 IPR003105 -
Vimu3g02404 269 SUPERFAMILY PUA domain-like 130 256 IPR015947 -
Vimu3g02404 269 Gene3D - 130 265 IPR036987 -
Vimu3g02404 269 ProSiteProfiles YDG domain profile. 148 269 IPR003105 -
Vimu3g02404 269 Pfam SAD/SRA domain 148 253 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02404 Vimu-Chr3 38584369 38585943 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02404 126 250 Su(var)3-9 homologs AT1G73100 37.209 3.56e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02404 - K11420 vra:106754179 327.02