Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02401 ATGGGGCAAGGGCAATCCAAAGACGAGTTGCTCTACCAGCAAGTCAGTTATGGGAACACCGAAGGAATCAAAAGCCTTCACAGAGACGGTGCAGGCCTTGAGGTATTGGAACGTGGCAAAATTTCAGGGGGAAATGAGAATTTTGTTATTATTATTGATGGTTCTAGGTTTGGATCGTGGAGGGACAAAGATGCGAAGACCCCCTTGATTGTTGCTTGTATGAATCCTCATCTTTATAATGTTGCGAAAACTTTGATAGAACTTGGAGCCAATGTCAATGCATATCGTCCTGGTCGTCATGGTGGGACTCCGTTGCATCATGCAGCTAAAAGGGGCTTTGAAAGTATTATTAAGTTACTTCTTGTGCATGGCGCTAATCCTTTAATATTAAATGATGATTGTCTAACTTCTCTGGAGGTTGCCAGAGCCAAAGGACATGGTGGTGCTGTTCGTACAATTGAGAGTCATCTGTGCTTGTTCTCCGGTTGGTTACGTGAGCTTCATGGACCTGAGTTTCTAGAAGTAGTAGCTCCTCAGTTGCTATCAAGAAAAGTGTGGGTATCATTGGGCTCCCGAACTCTTACCAAACCTTACAAGTTGGAACTTGCCATATATTCTAGTTTGCAGGACGCACAACCACGTACAGTTATTGCACTGTGGAAGGCCAATTTACATCCAAAGATACACCAGTCTGATCCACTTGGGCCTGCAAGTGAGAATGACAAGCAACAACTTGCATTTTTTTCTAATGCTTGCAAAGGAATTCCTCAGGCAAGTCCGGCATTCTTGCAAAACAATGCACCTACAGGTCCACCCACAGCGCCACCAGCTGCAGAAGACACAGAGTTAGCTATGGCCATCAATGCATCCCTTCAGTCTGCCATGCAGGAGAGGCCATCCTTTCCTGATACACAACCAAACTCTGATGCAAGCTCTTCAAGCACTGCAGTGAATACAGGCAATCATGGTTTTCTTGGCACACCAAATTCAAATACAAGTGAAAGTGAGTTGGTGCAAGAAACTAAAACTGGTGGCAATGGTGAACACCACCAAAGCCATGTCAATGCTAGTGAATTGGAATTCAATCCATCGGCTCCACCAATCGTGGGTGATATTCCAACAGATGGTCCCATTCAGTATCCATCAATTGATTTAAGCCCTATTGATATGGCATCTTCAGATGTTGAGAAGCTTCCTAATGGAGAAGGAAAAACTGCTAGTGGAAGTGGCTCATCATGTGTGATATGTTTAGATGCTCCAGCAGAAGGGGCGTGCATTCCCTGTGGTCATGTTGCTGGATGCATGTCTTGCTTGAACGAGGTGAAATCAAAGAAATGGGGTTGCCCTGTATGTCGAGCTAAGATAGACCAGATCATAAAGCTATATCATGTTTGA 1395 0.4452 MGQGQSKDELLYQQVSYGNTEGIKSLHRDGAGLEVLERGKISGGNENFVIIIDGSRFGSWRDKDAKTPLIVACMNPHLYNVAKTLIELGANVNAYRPGRHGGTPLHHAAKRGFESIIKLLLVHGANPLILNDDCLTSLEVARAKGHGGAVRTIESHLCLFSGWLRELHGPEFLEVVAPQLLSRKVWVSLGSRTLTKPYKLELAIYSSLQDAQPRTVIALWKANLHPKIHQSDPLGPASENDKQQLAFFSNACKGIPQASPAFLQNNAPTGPPTAPPAAEDTELAMAINASLQSAMQERPSFPDTQPNSDASSSSTAVNTGNHGFLGTPNSNTSESELVQETKTGGNGEHHQSHVNASELEFNPSAPPIVGDIPTDGPIQYPSIDLSPIDMASSDVEKLPNGEGKTASGSGSSCVICLDAPAEGACIPCGHVAGCMSCLNEVKSKKWGCPVCRAKIDQIIKLYHV 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02401 464 ProSiteProfiles Ankyrin repeat profile. 64 97 IPR002110 GO:0005515
Vimu3g02401 464 SMART ANK_2a 100 129 IPR002110 GO:0005515
Vimu3g02401 464 SMART ANK_2a 64 94 IPR002110 GO:0005515
Vimu3g02401 464 MobiDBLite consensus disorder prediction 294 352 - -
Vimu3g02401 464 PANTHER ROLLING PEBBLES, ISOFORM B 59 226 - -
Vimu3g02401 464 SMART ring_2 413 451 IPR001841 -
Vimu3g02401 464 ProSiteProfiles Ankyrin repeat profile. 100 132 IPR002110 GO:0005515
Vimu3g02401 464 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 390 463 IPR013083 -
Vimu3g02401 464 ProSiteProfiles Zinc finger RING-type profile. 413 452 IPR001841 -
Vimu3g02401 464 Gene3D - 2 192 IPR036770 -
Vimu3g02401 464 Pfam Zinc finger, C3HC4 type (RING finger) 411 458 - -
Vimu3g02401 464 SUPERFAMILY Ankyrin repeat 9 158 IPR036770 -
Vimu3g02401 464 SUPERFAMILY RING/U-box 412 458 - -
Vimu3g02401 464 Pfam Ankyrin repeats (3 copies) 58 127 IPR002110 GO:0005515
Vimu3g02401 464 ProSiteProfiles Ankyrin repeat region circular profile. 64 94 - -
Vimu3g02401 464 CDD RING-HC_XBAT35-like 409 462 - -
Vimu3g02401 464 ProSiteProfiles Ankyrin repeat region circular profile. 100 126 - -
Vimu3g02401 464 MobiDBLite consensus disorder prediction 259 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02401 Vimu-Chr3 38554668 38558994 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02401 403 461 C3H Transcription Factor Family AT3G06140 35.593 2.97e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02401 - - gmx:100789309 723.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02401 3 38554668 38558994 Vimu3g02401 3 38554668 38558994 ECH