Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu3g02401 | ATGGGGCAAGGGCAATCCAAAGACGAGTTGCTCTACCAGCAAGTCAGTTATGGGAACACCGAAGGAATCAAAAGCCTTCACAGAGACGGTGCAGGCCTTGAGGTATTGGAACGTGGCAAAATTTCAGGGGGAAATGAGAATTTTGTTATTATTATTGATGGTTCTAGGTTTGGATCGTGGAGGGACAAAGATGCGAAGACCCCCTTGATTGTTGCTTGTATGAATCCTCATCTTTATAATGTTGCGAAAACTTTGATAGAACTTGGAGCCAATGTCAATGCATATCGTCCTGGTCGTCATGGTGGGACTCCGTTGCATCATGCAGCTAAAAGGGGCTTTGAAAGTATTATTAAGTTACTTCTTGTGCATGGCGCTAATCCTTTAATATTAAATGATGATTGTCTAACTTCTCTGGAGGTTGCCAGAGCCAAAGGACATGGTGGTGCTGTTCGTACAATTGAGAGTCATCTGTGCTTGTTCTCCGGTTGGTTACGTGAGCTTCATGGACCTGAGTTTCTAGAAGTAGTAGCTCCTCAGTTGCTATCAAGAAAAGTGTGGGTATCATTGGGCTCCCGAACTCTTACCAAACCTTACAAGTTGGAACTTGCCATATATTCTAGTTTGCAGGACGCACAACCACGTACAGTTATTGCACTGTGGAAGGCCAATTTACATCCAAAGATACACCAGTCTGATCCACTTGGGCCTGCAAGTGAGAATGACAAGCAACAACTTGCATTTTTTTCTAATGCTTGCAAAGGAATTCCTCAGGCAAGTCCGGCATTCTTGCAAAACAATGCACCTACAGGTCCACCCACAGCGCCACCAGCTGCAGAAGACACAGAGTTAGCTATGGCCATCAATGCATCCCTTCAGTCTGCCATGCAGGAGAGGCCATCCTTTCCTGATACACAACCAAACTCTGATGCAAGCTCTTCAAGCACTGCAGTGAATACAGGCAATCATGGTTTTCTTGGCACACCAAATTCAAATACAAGTGAAAGTGAGTTGGTGCAAGAAACTAAAACTGGTGGCAATGGTGAACACCACCAAAGCCATGTCAATGCTAGTGAATTGGAATTCAATCCATCGGCTCCACCAATCGTGGGTGATATTCCAACAGATGGTCCCATTCAGTATCCATCAATTGATTTAAGCCCTATTGATATGGCATCTTCAGATGTTGAGAAGCTTCCTAATGGAGAAGGAAAAACTGCTAGTGGAAGTGGCTCATCATGTGTGATATGTTTAGATGCTCCAGCAGAAGGGGCGTGCATTCCCTGTGGTCATGTTGCTGGATGCATGTCTTGCTTGAACGAGGTGAAATCAAAGAAATGGGGTTGCCCTGTATGTCGAGCTAAGATAGACCAGATCATAAAGCTATATCATGTTTGA | 1395 | 0.4452 | MGQGQSKDELLYQQVSYGNTEGIKSLHRDGAGLEVLERGKISGGNENFVIIIDGSRFGSWRDKDAKTPLIVACMNPHLYNVAKTLIELGANVNAYRPGRHGGTPLHHAAKRGFESIIKLLLVHGANPLILNDDCLTSLEVARAKGHGGAVRTIESHLCLFSGWLRELHGPEFLEVVAPQLLSRKVWVSLGSRTLTKPYKLELAIYSSLQDAQPRTVIALWKANLHPKIHQSDPLGPASENDKQQLAFFSNACKGIPQASPAFLQNNAPTGPPTAPPAAEDTELAMAINASLQSAMQERPSFPDTQPNSDASSSSTAVNTGNHGFLGTPNSNTSESELVQETKTGGNGEHHQSHVNASELEFNPSAPPIVGDIPTDGPIQYPSIDLSPIDMASSDVEKLPNGEGKTASGSGSSCVICLDAPAEGACIPCGHVAGCMSCLNEVKSKKWGCPVCRAKIDQIIKLYHV | 464 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu3g02401 | 464 | ProSiteProfiles | Ankyrin repeat profile. | 64 | 97 | IPR002110 | GO:0005515 | |
Vimu3g02401 | 464 | SMART | ANK_2a | 100 | 129 | IPR002110 | GO:0005515 | |
Vimu3g02401 | 464 | SMART | ANK_2a | 64 | 94 | IPR002110 | GO:0005515 | |
Vimu3g02401 | 464 | MobiDBLite | consensus disorder prediction | 294 | 352 | - | - | |
Vimu3g02401 | 464 | PANTHER | ROLLING PEBBLES, ISOFORM B | 59 | 226 | - | - | |
Vimu3g02401 | 464 | SMART | ring_2 | 413 | 451 | IPR001841 | - | |
Vimu3g02401 | 464 | ProSiteProfiles | Ankyrin repeat profile. | 100 | 132 | IPR002110 | GO:0005515 | |
Vimu3g02401 | 464 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 390 | 463 | IPR013083 | - | |
Vimu3g02401 | 464 | ProSiteProfiles | Zinc finger RING-type profile. | 413 | 452 | IPR001841 | - | |
Vimu3g02401 | 464 | Gene3D | - | 2 | 192 | IPR036770 | - | |
Vimu3g02401 | 464 | Pfam | Zinc finger, C3HC4 type (RING finger) | 411 | 458 | - | - | |
Vimu3g02401 | 464 | SUPERFAMILY | Ankyrin repeat | 9 | 158 | IPR036770 | - | |
Vimu3g02401 | 464 | SUPERFAMILY | RING/U-box | 412 | 458 | - | - | |
Vimu3g02401 | 464 | Pfam | Ankyrin repeats (3 copies) | 58 | 127 | IPR002110 | GO:0005515 | |
Vimu3g02401 | 464 | ProSiteProfiles | Ankyrin repeat region circular profile. | 64 | 94 | - | - | |
Vimu3g02401 | 464 | CDD | RING-HC_XBAT35-like | 409 | 462 | - | - | |
Vimu3g02401 | 464 | ProSiteProfiles | Ankyrin repeat region circular profile. | 100 | 126 | - | - | |
Vimu3g02401 | 464 | MobiDBLite | consensus disorder prediction | 259 | 278 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu3g02401 | Vimu-Chr3 | 38554668 | 38558994 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu3g02401 | 403 | 461 | C3H Transcription Factor Family | AT3G06140 | 35.593 | 2.97e-09 | 56.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu3g02401 | - | - | gmx:100789309 | 723.776 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vimu3g02401 | 3 | 38554668 | 38558994 | Vimu3g02401 | 3 | 38554668 | 38558994 | ECH |