Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02399 ATGGTCAGAGCTCCTTGTTGTGAAAAGATGGGATTGAAGAAGGGTCCTTGGGCTCCTGAGGAAGATCAAATCCTCACTTCTTACATCCAAAAACACGGCCATGGCAATTGGCGTGCCCTCCCAAAACAAGCTGGCCTGTTAAGATGTGGAAAAAGTTGCAGACTGCGATGGATTAACTATTTGAAGCCTGATATCAAGAGAGGAAATTTCACATCTGAAGAAGAAGAAACTATCATTAAGCTGCACGAGATGCTGGGTAACAGGTGGTCGGCAATTGCAGCAAAATTGCCAGGAAGAACTGACAATGAAATAAAAAATGTGTGGCACACCAATTTGAAGAAGAGGTTGCTGAATCCAAATTCCAGAAGAGTCACAAAGCCAAAAATCAGACGTTCTGATTCCAATTCCAGCATCATAACTGAATCAGAACCTGCCAATTTTAATTTCAGAGAAATGGATTCAACATCTGCATGCACTACTTCTAGTGATTTTTCATCGGTCACAGTTGGTGAAAGCAAAAATATAAAGTGTGAAGACATAGAGTCTCTGGAGACAATGCCCGTGATTGACGAGAGTTTTTGGTCAGAACCTGCAATTGATGAAACACCCTCTATGTCATCACCATCCATGACAATCTCAAATCAGATGCCATTTCAATACCCTTTTACTAACTATGAGGAAACTTTCCAGCAGAGTCATGCTTACGATTCAAACTTTGATGACGGCATGGATTTCTGGTATGACATATTCAGCAGGACCGCTGATTCCACAGAATTGCCAGAGTTCTGA 789 0.417 MVRAPCCEKMGLKKGPWAPEEDQILTSYIQKHGHGNWRALPKQAGLLRCGKSCRLRWINYLKPDIKRGNFTSEEEETIIKLHEMLGNRWSAIAAKLPGRTDNEIKNVWHTNLKKRLLNPNSRRVTKPKIRRSDSNSSIITESEPANFNFREMDSTSACTTSSDFSSVTVGESKNIKCEDIESLETMPVIDESFWSEPAIDETPSMSSPSMTISNQMPFQYPFTNYEETFQQSHAYDSNFDDGMDFWYDIFSRTADSTELPEF 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02399 262 CDD SANT 69 112 IPR001005 -
Vimu3g02399 262 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vimu3g02399 262 FunFam Myb transcription factor 11 67 - -
Vimu3g02399 262 Gene3D - 13 66 - -
Vimu3g02399 262 CDD SANT 16 61 IPR001005 -
Vimu3g02399 262 SMART sant 13 63 IPR001005 -
Vimu3g02399 262 SMART sant 66 114 IPR001005 -
Vimu3g02399 262 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Vimu3g02399 262 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 203 - -
Vimu3g02399 262 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vimu3g02399 262 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vimu3g02399 262 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vimu3g02399 262 Gene3D - 68 140 - -
Vimu3g02399 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vimu3g02399 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02399 Vimu-Chr3 38535319 38536961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02399 1 262 MYB Transcription Factor Family AT2G31180 49.632 2.24e-80 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu3g02399 Myb_DNA-binding 1.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02399 K09422 - gmx:100807569 453.751