Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02393 ATGACAAGGGAACTCATGAAGGTCAACTTGAGGAAGCTCTCAGAAGCCGTCACATGTTATTTGTGCAATAAATGGTTGAGAAACGCAGCCACAATAACAGAGTGCTGTCATAGTTTTTGCAGGGAATGTATAGAAAAGAAGTTAAAAGATGAGAAATTAAATCATTGTCCGGTTTGCAATACAGACTTGGGTTGTTCTCCACTCGACAAATTAAGGTCAGATACTCGTAAGCAAGAATTGAGGGACAAAATTTTCCCATTTCAAAATGATGAGGAACCTGCCGCCAAATTGTTAGCCAAAATAAAGAAGAATTTAGTTTCTTCATTAAAACCCGATAGAGAAATATCCAAAGCTGGTTTTAGAAAAGTTCTCATTGCCGAAGAAGCAGATATTTCATCTCCCAAACTCGATAAAGTGGAAGATGATAAGGAAGATGAAAACCAGGGTGATGCTGAATTTGGGGAAGAAGGCGCTACAATTGGATCCGCTAGAAGAGCGAAAGCTGCGGCAAGAATAAAATTCATTTGCTCTGCACAACCTCCGGGACAAGGAAAGACAGAGGGTGATCAGCCTCGAGTTGAAACTTCCAGCGGAACTCTCAAAATCAGAATTCCGAATCTTTCAAAACCAAATACTGAGTTAAGGAATGAAAAGGCTGACATGTTTGAGCCAATAAATAGCCAGGTGGGAGCTGGAAGAAAACGCAAGTCCCGTAGTAATTTCACCATTCAAGAAAATGGTGTCACTTCAGTACTTGTGCACTCTAACGACGATGACCCTCAGGTTGGTATGGTCGAAATCGACAACCATAGTCACAAAACTGATGGTAACCAAAACGAGTCAATTCCCTCAAGCTCAGATTCAGTAAAACCTATTGTGAGCACCCGAGAAAAAAGACCAAAAATCTCGAAGGACTTGAATTTTCCAGCACCAGCTGAAACTGATTCCGACAGTGAAAGCAGCAAAGAGTTTGGTCCAATCTGGTTCTGCTTGGTTGCTGCAGAAGAGAGAAAAGGAAGTGCACCATTGCCACAACTATCTTCGTGCTACCTACGAGTCAAGGATGGCAGTGTAACTGTTTCCTACATTAAAAAGTATCTCGTGAAGAAGCTTGGTCTTGCTAGCGAAACTGAGGTGGAGATCACATTACAAGGGCAGCCAGTTTTATCTTCATTGCAACTGAACAGCTTAGTAGACATCTGGTTGAAAACAGTTCCAAAGAATGAGATTCTGACATCTTTTGGAAGTTCAGCCAAGGATTTTATTATGGTTCTTTCGTATGGTCGAAAGGCTTAA 1296 0.4136 MTRELMKVNLRKLSEAVTCYLCNKWLRNAATITECCHSFCRECIEKKLKDEKLNHCPVCNTDLGCSPLDKLRSDTRKQELRDKIFPFQNDEEPAAKLLAKIKKNLVSSLKPDREISKAGFRKVLIAEEADISSPKLDKVEDDKEDENQGDAEFGEEGATIGSARRAKAAARIKFICSAQPPGQGKTEGDQPRVETSSGTLKIRIPNLSKPNTELRNEKADMFEPINSQVGAGRKRKSRSNFTIQENGVTSVLVHSNDDDPQVGMVEIDNHSHKTDGNQNESIPSSSDSVKPIVSTREKRPKISKDLNFPAPAETDSDSESSKEFGPIWFCLVAAEERKGSAPLPQLSSCYLRVKDGSVTVSYIKKYLVKKLGLASETEVEITLQGQPVLSSLQLNSLVDIWLKTVPKNEILTSFGSSAKDFIMVLSYGRKA 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02393 431 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Vimu3g02393 431 MobiDBLite consensus disorder prediction 178 197 - -
Vimu3g02393 431 MobiDBLite consensus disorder prediction 276 291 - -
Vimu3g02393 431 SUPERFAMILY RING/U-box 12 68 - -
Vimu3g02393 431 SMART ring_2 19 59 IPR001841 -
Vimu3g02393 431 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 4 430 IPR044807 GO:0004842
Vimu3g02393 431 MobiDBLite consensus disorder prediction 269 322 - -
Vimu3g02393 431 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Vimu3g02393 431 MobiDBLite consensus disorder prediction 135 160 - -
Vimu3g02393 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 108 IPR013083 -
Vimu3g02393 431 Gene3D - 306 412 - -
Vimu3g02393 431 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02393 Vimu-Chr3 38489535 38492581 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02393 5 354 C3H Transcription Factor Family AT2G30580 29.076 2.74e-27 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02393 K16277 - gmx:102669950 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02393 3 38489535 38492581 Vimu3g02393 3 38489535 38492581 ECH