Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02392 ATGGCTGGGGATGGGAGTGTCGTCCCTGCAGACCCAGGGGCAATGACAGTTGTAAAGAAGAAGACACAGTCTTCAAGGAGTTGGATTCTCATTGATGCTTCTGGACATGGTTCATTGCTCGACGTGGACAAATATGCAATCATGAATCGGGTTCAGATTCATGCGCGTGATCTCAGAATCCTTGATCCCTTGCTCTCTTATCCCTCCACCATTCTCGGTCGTGAGAAGGCGATTGTTCTTAACTTGGAGCATATCAAAGCAATTATCACAGCTGAAGAGGTATTGCTGAGAGATCCAACAGATGAAAATGTGATCCCGGTTGTCGAGGAACTGCAGAGGAGGTTGCCTCGATTAAGTGCCGGTCTTCAACAGCAAGGAGATAGTAAAGAGTATCTTGGAGGCCAAAATGACGCTGAAGCAGCTGAAGAAGATGAGTCACCCTTTGAATTTCGGGCACTGGAGGTTGCTTTAGAAGCCATTTGTAGTTTTCTTGCTGCACGTACAACAGAGTTGGAGATGGCTGCTTATCCTGCATTAGATGAACTTACCTCCAAGATTAGTAGTCGTAATTTGGACAGAGTTCGTAAACTGAAGAGTGCAATGACAAGGCTGACTGCTAGAGTCCAAAAGGTTAGAGACGAGCTTGAACAATTGCTGGATGATGATGATGATATGGCTGACCTATACCTGTCAAGAAAAGGGGGGTCATCATCACCAGTCAGTGGATCAGGTGCTGCAAATTGGTTTGCTGCCTCCCCCACCATAGGATCAAAGATATCTAGAGCCAGTAGAGCAAGTGTAGCAACAGTTCGTTTAGATGAAAATGATGTGGAAGAGCTGGAAATGTTACTAGAGGCTTATTTTAGTGAAATAGATCACACTTTGAACAAATTAACCACGCTGCGAGAGTACATTGATGATACTGAAGATTATATTAATATTCAACTTGACAACCATCGTAATCAGCTGATTCAGCTAGAGCTCTTTCTTAGCTCTGGAACTGTTTGTCTATCTTTCTACGCTTTGGTAACTGCTATATTTGGCATGAATATCCCATATACTTGGAACCAAGACCATGGTTACATGTTCAAATGGGTAGTTATTACAGCAGGATTATTTTCTGCTTTGACGCTTGTCACGATTACTGCTTATGCTCGCAAAAAGGGATTAATTGGATCTTGA 1182 0.4332 MAGDGSVVPADPGAMTVVKKKTQSSRSWILIDASGHGSLLDVDKYAIMNRVQIHARDLRILDPLLSYPSTILGREKAIVLNLEHIKAIITAEEVLLRDPTDENVIPVVEELQRRLPRLSAGLQQQGDSKEYLGGQNDAEAAEEDESPFEFRALEVALEAICSFLAARTTELEMAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKGGSSSPVSGSGAANWFAASPTIGSKISRASRASVATVRLDENDVEELEMLLEAYFSEIDHTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSFYALVTAIFGMNIPYTWNQDHGYMFKWVVITAGLFSALTLVTITAYARKKGLIGS 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02392 393 Gene3D Magnesium transport protein CorA, transmembrane region 106 323 - -
Vimu3g02392 393 Gene3D - 14 99 - -
Vimu3g02392 393 Pfam CorA-like Mg2+ transporter protein 271 379 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Vimu3g02392 393 Coils Coil 194 221 - -
Vimu3g02392 393 CDD Mrs2_Mfm1p-like 28 390 IPR039204 -
Vimu3g02392 393 FunFam Magnesium transporter MRS2-1 16 99 - -
Vimu3g02392 393 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 16 391 IPR039204 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02392 Vimu-Chr3 38473320 38478120 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02392 1 366 MRS2 Gene Family AT5G64560 80.707 0.0 537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02392 K16075 - gmx:100810239 686.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02392 3 38473320 38478120 Vimu3g02392 3 38473320 38478120 ECH