Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02391 ATGGCAACTATGCTGGCAAAGGACCATGCTCTCAACCTCAAGGAGACTGAGCTTTGCCTCGGTCTGCCTGGTGCTGGCGGTGGAGGCGGCGGCGGCGGTGGCGGCTGCTCTGAGGTGGAAACACCAAGGGCTACTGGGAAAAGAGGGTTCTCTGAGACAGTTGATCTGAAGCTTAATCTGCAGACCAAGGAAGATCTCAACGACAATCTGAAGAATGCCTCAGAGGAGAAGACCCTCCTTAAGGATCCTACCAAACAGCCCGCTAAGGCTCAAGTGGTTGGTTGGCCACCAGTGAGGTCATACAGAAAGAACATGATGACCCAGAAGGTTAGCACTGAGGATGGAGCTGAGAAGACAACAAGCAGCACTGCTTCTGGGGCATTTGTCAAAGTTTCCATGGACGGAGCTCCTTATCTTCGCAAGGTGGACCTCACAATGTACAAAAGCTACAAAGAGTTATCTGATGCCTTGGCCAAAATGTTCAGCTCCTTCACCATGGGTAATTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGCGCAAGTTGATGGATCTTCTTAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGTGACTGGATGCTCGTGGGTGATGTCCCATGGGACGCCAAGAGCAATGGAAAAATGCAAAAGCAGAAGCTGAAGGTGGGGAAATACATGATGTGTGAGATTATTCCGTACCAAATTGGAGCTATAAAAGAAATATGTGAAGCATTTCTGCTGAGACTATATGGAGCGGAGTGCTGTTAG 780 0.4897 MATMLAKDHALNLKETELCLGLPGAGGGGGGGGGGCSEVETPRATGKRGFSETVDLKLNLQTKEDLNDNLKNASEEKTLLKDPTKQPAKAQVVGWPPVRSYRKNMMTQKVSTEDGAEKTTSSTASGAFVKVSMDGAPYLRKVDLTMYKSYKELSDALAKMFSSFTMGNYGAQGMIDFMNERKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWDAKSNGKMQKQKLKVGKYMMCEIIPYQIGAIKEICEAFLLRLYGAECC 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02391 259 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 219 IPR003311 GO:0005634|GO:0006355
Vimu3g02391 259 MobiDBLite consensus disorder prediction 27 46 - -
Vimu3g02391 259 FunFam Auxin-responsive protein 121 233 - -
Vimu3g02391 259 ProSiteProfiles PB1 domain profile. 126 229 IPR000270 GO:0005515
Vimu3g02391 259 SUPERFAMILY CAD & PB1 domains 123 213 - -
Vimu3g02391 259 Gene3D - 121 231 - -
Vimu3g02391 259 Pfam AUX/IAA family 44 212 IPR033389 -
Vimu3g02391 259 Coils Coil 56 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02391 Vimu-Chr3 38442698 38444847 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02391 124 212 B3 DNA Binding Superfamily AT3G61830 35.955 3.82e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vimu3g02391 AUX_IAA 3.1e-64 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02391 K14484 - gmx:100810762 346.665
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02391 3 38442698 38444847 Vimu3g02391 3 38442698 38444847 ECH