Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02390 ATGGAAAGCACTGTCACCTACGAGACCGATCTCAACCTCAAGGCAACTGAGCTTAGATTGGGGCTCCCAGGAACAGAAGAAACTCAGGAAAAAACACTGTCTCCATCTGTTAGAATTACCAACAAAAGATCATTGACTGAAACTTCTGAGGAGACTGTTTCTAATGCTAAAAAAAATGTGGAAGCTGAGGCAGCCCCTCCAGCCAAGGCAAAGATAGTGGGGTGGCCACCAATCAGATCCTATAGGAAAAACAGCCTTCATGAGAATGAGGGTGCTGGGATTTATGTGAAAGTTAGCATGGATGGAGCCCCTTACCTTAGGAAGATTGACCTCAAGGTATATGGAGGCTACACACAACTTCTCAAAGCTCTAGAAAACATGTTCAAGTTGACCATAGGTGAGTACTCTGAAAAAGAAGGTTACAAGGGATCTGACTATGCACCAACCTATGAAGACAAGGACGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGACATGTTTGTGACTTCCTGCAAAAGGCTGAGGATCATGAAAGGATCAGAGGCTCGGGGTTTGGGTTGTGGTGTATGA 573 0.452 MESTVTYETDLNLKATELRLGLPGTEETQEKTLSPSVRITNKRSLTETSEETVSNAKKNVEAEAAPPAKAKIVGWPPIRSYRKNSLHENEGAGIYVKVSMDGAPYLRKIDLKVYGGYTQLLKALENMFKLTIGEYSEKEGYKGSDYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGSEARGLGCGV 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02390 190 ProSiteProfiles PB1 domain profile. 93 180 IPR000270 GO:0005515
Vimu3g02390 190 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 184 IPR003311 GO:0005634|GO:0006355
Vimu3g02390 190 Gene3D - 87 190 - -
Vimu3g02390 190 FunFam Auxin-responsive protein 88 190 - -
Vimu3g02390 190 SUPERFAMILY CAD & PB1 domains 83 179 - -
Vimu3g02390 190 Pfam AUX/IAA family 43 187 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02390 Vimu-Chr3 38399581 38400473 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02390 96 186 B3 DNA Binding Superfamily AT2G46530 37.363 5.55e-11 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vimu3g02390 AUX_IAA 1e-53 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02390 K14484 - gmx:100527777 326.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02390 3 38399581 38400473 Vimu3g02390 3 38399581 38400473 ECH