Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02386 ATGGAACCGCCATTGCAACAGCAACCATCACCGCCACCGTCACCGTCACCGCGCTCCCTCACCATCCTCGGGAAATACCAGCTGACGCGCCTTCTCGGCCGTGGCAGCTTCGCCAAGGTCTACCAGGCACGATCCCTAATTGACGGCGCCACCTTCGCCGTCAAAATTATTGACAAATCCAAAACCGTCGACGCCGGCATGGAGCCCCGCATAATCCGCGAGATCGACGCCATGCGCCGCCTCCACCACCATCCTAACATCCTTAAAATCCACGAGGTTATGGCCACGAAGACCAAAATCCACCTCATCGTGGAGCTTGCCGCCGGAGGCGAGCTCTTCGCTAGAATCTCCCGTCGCGGCCGTTTGCCGGAGTCCACAGCGCGCCGATACTTCCAGCAGCTGGTCTCGGCGCTCCGGTTCTGCCACCGCAACGGTGTGGCGCACCGAGACCTCAAACCGCAGAACCTCCTCCTCGACGGCGAAGGAAACCTCAAAGTCTCCGACTTCGGCCTCTCCGCTCTGCCGGAGCATCTCAAGAATGGCCTTCTCCACACAGCATGCGGTACGCCAGCGTACACAGCGCCCGAGATCCTCCGCCAGAACGGCGGCTACGACGGGTCCAAGGCCGACGCCTGGTCCTGCGGCCTCATTCTCTACGTCTTCCTCGCCGGCTACCTTCCGTTCGACGACACGAACATTCCGGCGATGTACAAGAAGATTTCCCGGAGAGATTACCAGTTCCCCGACTGGATATCAAAACCGGCTCGCTATGTTATATATAAATTACTGGACCCGAACCCGGAAACAAGAATGGGTTTGGAGGCTCTGTTTGGGAACCCGTGGTTCAAGAAATCATTGAAACCAGAAACGGCGGAGGAAAGCGCGTTTGGGTGGGATAACGTTTATGTGAAGGGTTGTTACTACGAAGGGGTTAAGTGTTCGGGTGTGAACGCGTTTGATATAATATCGATGTCTTCGGGGTTGAATTTAACGAGGCTGTTCGAAACAACGTCGGATGGAGGTAGTAGGAGGGAGAAGAGATTCACTTCGAGTGCTCGCGTGGAGGTGGTAGAGGAGAAGCTTAAGGAAGTGGGTGGGGTTTTGGGGTTTAAGGTTGAGGCTGGGAAAGCCATTAACGGTGCAATTGCGTTGTTGAAAGGAAAGGTGGCTTTGGTGTTTGAGGTGCTTCAGATTGTGCCCGATCAGCTTCTTCTGGTAGCCGTGAAGGTCGTCGAGGGTGCTTTAGAGTTTGAGGAGCATCACTGGGGTGATTGGAAAAATGCCTTGCAAGATCTCGTCCTCTCTTGGCACAACGATGAATCTTGA 1326 0.5535 MEPPLQQQPSPPPSPSPRSLTILGKYQLTRLLGRGSFAKVYQARSLIDGATFAVKIIDKSKTVDAGMEPRIIREIDAMRRLHHHPNILKIHEVMATKTKIHLIVELAAGGELFARISRRGRLPESTARRYFQQLVSALRFCHRNGVAHRDLKPQNLLLDGEGNLKVSDFGLSALPEHLKNGLLHTACGTPAYTAPEILRQNGGYDGSKADAWSCGLILYVFLAGYLPFDDTNIPAMYKKISRRDYQFPDWISKPARYVIYKLLDPNPETRMGLEALFGNPWFKKSLKPETAEESAFGWDNVYVKGCYYEGVKCSGVNAFDIISMSSGLNLTRLFETTSDGGSRREKRFTSSARVEVVEEKLKEVGGVLGFKVEAGKAINGAIALLKGKVALVFEVLQIVPDQLLLVAVKVVEGALEFEEHHWGDWKNALQDLVLSWHNDES 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02386 441 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 21 381 - -
Vimu3g02386 441 SUPERFAMILY Protein kinase-like (PK-like) 22 289 IPR011009 -
Vimu3g02386 441 FunFam Non-specific serine/threonine protein kinase 17 304 - -
Vimu3g02386 441 ProSitePatterns Protein kinases ATP-binding region signature. 32 55 IPR017441 GO:0005524
Vimu3g02386 441 ProSiteProfiles NAF domain profile. 311 335 IPR018451 GO:0007165
Vimu3g02386 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Vimu3g02386 441 ProSiteProfiles Protein kinase domain profile. 26 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02386 441 Pfam NAF domain 316 373 IPR004041 GO:0007165
Vimu3g02386 441 Pfam Protein kinase domain 26 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02386 441 SMART serkin_6 26 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02386 441 CDD CIPK_C 317 430 - -
Vimu3g02386 441 Gene3D Transferase(Phosphotransferase) domain 1 18 307 - -
Vimu3g02386 441 FunFam Non-specific serine/threonine protein kinase 19 111 - -
Vimu3g02386 441 Gene3D Kinase associated domain 1, KA1 312 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02386 Vimu-Chr3 38343256 38345474 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02386 10 438 CBL-interacting serine-threonine protein kinases AT4G14580 59.540 4.22e-171 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vimu3g02386 Pkinase 6.2e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02386 K12761 - gmx:100784173 731.48