Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02371 ATGGAGGGAAGAGAGAGTTTTGGTGTTGTGGTGGGTGATGAAGCCCCCGAGAGCTTCCATGTTGCTCCTAGAATAATTGAGAACAACTTGGACTTTTCAAGGGCCGTCGTGCCTGCGCCGTCGACGGAGGGTAAAAAGAAGAGAGGGAGACCGAGGAAGTATGGGCCGGACGGGAAGGTGGCTATGGATGCGGTGACGGCGCTTTCGCCGATGCCGATTTCATCGTCGATTCCGTTGACCGGCGAGTTCTCCGCTTGGAAGAGAGGTAGAGGAAGGCCTGTTGAATCTATCAAAAAGTCATCGTTCAAGTTTGAGGTTGAAAGCCCTGGTCAAGGAGGTCTAGAATATGACATAATGGACTTGATAGTTGAAGCAGAATTCCGGGGTTGGGACCAGGTTATGGGGTATCTTGTGTGGGTACTGGATAGGTGTGGCTTCTGGTATCTACTATATTATGAACCAACGTCCCCGTATTATATCAATACATATATTTTTTCATTTTGTGTCTCTCTCCTTGTATTTATCTTCCCATGTATGCATTTTATAGGTGATGGAATATCATACTCCGTTGGTGCCAATTTCACACCACATGTTCTCACAGTAAATTCTGGCGAGGATGTCACTATGAAAATCATGTCCTTCTCACAACAAGGATCACGTGCTATATGCATTCTCTCTGCAACTGGGACAATTTCAAATGTTACACTTCGTCAACCATCTTCTTGTGGGGGTACTTTAACATATGAGGGACGGTTTGAAATTCTTTCCTTGTCTGGTTCCTTTATGCCAACTGAGAATGGAGTTACAAGAAGCAGATCTGGTGGCATGAGTGTCTCTTTGGCCGGTCCAGACGGTAGAGTAATGGGGGGTGGGCTTGCTGGTTTGCTGGTAGCCGCTGGTCCAGTTCAGGTTGTTGTTGGCAGTTTTCTTCCTGGTCACCAGTTGGAGCATAAAAACAAGAAGCAAAGGGTGGAGCATATATCAACTATTACCCCTTCTCCTGTTAATATCATCTCTAGTGAGGAACTAAAAGTCAGTTTCGGTGGAGTAAAGCCTATTATGACACCTGCTGCTTTTCAAGAAGAGAATATTGTTTCTTTTAACAATGGTCAAGACTCTAGGAACTCAGCTCCTGATGATAGAGATCCTTTACCCGATAAGGAGTCTAATCTAGGCCAATCAAACGCTGAGGCTGCATGCTAA 1203 0.4555 MEGRESFGVVVGDEAPESFHVAPRIIENNLDFSRAVVPAPSTEGKKKRGRPRKYGPDGKVAMDAVTALSPMPISSSIPLTGEFSAWKRGRGRPVESIKKSSFKFEVESPGQGGLEYDIMDLIVEAEFRGWDQVMGYLVWVLDRCGFWYLLYYEPTSPYYINTYIFSFCVSLLVFIFPCMHFIGDGISYSVGANFTPHVLTVNSGEDVTMKIMSFSQQGSRAICILSATGTISNVTLRQPSSCGGTLTYEGRFEILSLSGSFMPTENGVTRSRSGGMSVSLAGPDGRVMGGGLAGLLVAAGPVQVVVGSFLPGHQLEHKNKKQRVEHISTITPSPVNIISSEELKVSFGGVKPIMTPAAFQEENIVSFNNGQDSRNSAPDDRDPLPDKESNLGQSNAEAAC 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02371 400 Pfam Plants and Prokaryotes Conserved (PCC) domain 196 309 IPR005175 -
Vimu3g02371 400 FunFam AT-hook motif nuclear-localized protein 1-like 196 327 - -
Vimu3g02371 400 ProSiteProfiles PPC domain profile profile. 191 333 IPR005175 -
Vimu3g02371 400 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Vimu3g02371 400 SMART AT_hook_2 45 57 IPR017956 GO:0003677
Vimu3g02371 400 SUPERFAMILY AF0104/ALDC/Ptd012-like 193 313 - -
Vimu3g02371 400 CDD DUF296 195 309 IPR005175 -
Vimu3g02371 400 Gene3D - 196 329 - -
Vimu3g02371 400 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 37 368 IPR039605 GO:0003680
Vimu3g02371 400 MobiDBLite consensus disorder prediction 368 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02371 Vimu-Chr3 38164775 38170210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02371 182 338 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 68.790 1.18e-65 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02371 - - gmx:100789179 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02371 3 38164775 38170210 Vimu3g02371 3 38164775 38170210 ECH