Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02366 ATGGCGTTTTCAGTACTGCTACTGTTGTTCTCTCTTGCGTTTTTGCTCTCAAACCCAACATGGGTGCGTGGGAATGGAGAGCTAAGAGCACTGATGGATTTGAAAGCCAGTTTGGATCCAGAGAGCCTTTATCTACCGTCTTGGACTGTCAATGGTGACCCATGTGGTGGATATTTTGAAGGAGTGGCATGCAATGAGAAGGGTCAGGTGGCAAATATTTCTCTGCAGGGTAAGGGTCTCTCAGGGAAGCTTTCACCAGCCATTTCAGGGCTCAAGCACCTGACTGGACTCTACTTACATTATAACTCTCTGTATGGAGACATACCTAGAGAGATTGCAAACTTGACCGAGCTTGTTGATTTGTATTTGAATGTAAACAATCTGTCTGGGGAAATCCCACGCGAGATAGCCACCATGGAGAACTTGCAAGTTTTGCAGCTTTGCTATAATCACTTGACTGGAAGCATTCCTACACAGCTAGGTGCTTTGGAAAAGCTGAGTGTTGTTGCATTGCAGTCAAACCACTTAACTGGTGCTATCCCTGCTAGTCTAGGGGATTTGGGCATGCTGGCGAGGCTAGATTTGAGCTCTAATAATCTTTTTGGTTCCATTCCCACTAGTCTTGCCGAAGCTCCTTCACTGAGAGTTTTGGATGTTCACAACAACACCCTTTCTGGGAATGTACCTCCTGCTCTTAAGAGACTAGAGGATGGGTTTCTGTATGAGTACAATCTGGGGTTATGTGGAGTTGGGTTTTCATCCTTGAAAGATTGCAACGCTTCGGATCATGTCATTCCAAGCAGACCAGAGCCCTATGGAGCAGCCACGAGAGATATCCCTGAAACTGCAAATGTGAAGTTACCATGCAATGGTACTCAGTGCCTTAATTCATCAAAATCAAATCAATCTATATCAATTACTATAGTCATATTTGTGGTAATAATTGCAATGTCTGCAATTGGTATTTTGACATTCACACTGTATCGTCGGAGAAAGCAAAAACTTGGAGGTTCTTTTCATATCAGTGACAACCGTCAAGGTACTGAGGAGGCCATGGGTGTGTGTAGGAAAAAAGGATCTCCTTTGGTCAGCCTTGAGTACTCTACAGGATGGGACCCTTTGGCCGAGAGTAGAAATTTCAATGGGTACAGTCAAGATATGTTCCAGAGTTTGAGGTTCAATTTGGAGGAAGTGGAGTCTGCTACTCAGTATTTCTCAGAGTTGAATCTGTTGGGCAAGAATAGCTTCAGTGCAACATATAGAGGAGTTTTGAGAGATGGATCCGTTGTTGCTGTGAAGAGCATAAGTAAAACTAGTTGCAAGTCGGATGAAGCTGAGTTTATGAAGGGACTGAACATGTTGACCTCATTGAGGAATGATAATGTAGTTAGGTTGAGAGGATTCTGTTGTTCAAGGGGACGAGGGGAATGCTTTCTGATTTATGATTTTGTTTCCAACGGAAACCTTTCACGCTTCCTTGATGTTAAGGAAGGAGATGGTGAAGTCCTTGAATGGTCAACTAGAGTTTCTATTGTGAAAGGGGTTGCAAAAGGTATGGCATATTTACATGCATACAGAGCAAACAAACCAGTTTTGGTTCACCAAAACATCTCAGCTGACAGAGTCCTAATTGATCAGCGGTACAATGCATTGTTGGCAGATTCTGGCCTGTACAAGCTTCTTACTAATGATATTGTGTTCTCTGCACTGAAGGGTAGTGCAGCAAAGGGTTACCTGGCTCCTGAATATGCCACTACTGGGCGCCTTGCTCAGACAAGTGATGTCTATGCTTTTGGGGTGCTGCTTTTCCAGATCCTTTCTGGGAAGCTAGAAATCAGTACCAGCTCAATAAGGCTTGCTGCAGAGTGCTCCAACTTCCAAGAATTTATGGACCCAAATCTTCATGGAAGATACTTTGAATATGAAGCAGCTAAACTGGCAAAGATAGCTTTGCTTTGCTCCCATGAGTCTCCTTTCGAGAGGCCATCCATGGAAGCCATTGTTCAAGAACTGGGAAACTGCAGTAGCTGCCTCTGA 2037 0.4399 MAFSVLLLLFSLAFLLSNPTWVRGNGELRALMDLKASLDPESLYLPSWTVNGDPCGGYFEGVACNEKGQVANISLQGKGLSGKLSPAISGLKHLTGLYLHYNSLYGDIPREIANLTELVDLYLNVNNLSGEIPREIATMENLQVLQLCYNHLTGSIPTQLGALEKLSVVALQSNHLTGAIPASLGDLGMLARLDLSSNNLFGSIPTSLAEAPSLRVLDVHNNTLSGNVPPALKRLEDGFLYEYNLGLCGVGFSSLKDCNASDHVIPSRPEPYGAATRDIPETANVKLPCNGTQCLNSSKSNQSISITIVIFVVIIAMSAIGILTFTLYRRRKQKLGGSFHISDNRQGTEEAMGVCRKKGSPLVSLEYSTGWDPLAESRNFNGYSQDMFQSLRFNLEEVESATQYFSELNLLGKNSFSATYRGVLRDGSVVAVKSISKTSCKSDEAEFMKGLNMLTSLRNDNVVRLRGFCCSRGRGECFLIYDFVSNGNLSRFLDVKEGDGEVLEWSTRVSIVKGVAKGMAYLHAYRANKPVLVHQNISADRVLIDQRYNALLADSGLYKLLTNDIVFSALKGSAAKGYLAPEYATTGRLAQTSDVYAFGVLLFQILSGKLEISTSSIRLAAECSNFQEFMDPNLHGRYFEYEAAKLAKIALLCSHESPFERPSMEAIVQELGNCSSCL 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02366 678 Gene3D Phosphorylase Kinase; domain 1 374 483 - -
Vimu3g02366 678 SUPERFAMILY Protein kinase-like (PK-like) 380 671 IPR011009 -
Vimu3g02366 678 Gene3D Ribonuclease Inhibitor 140 260 IPR032675 -
Vimu3g02366 678 ProSiteProfiles Protein kinase domain profile. 405 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02366 678 Pfam Protein tyrosine and serine/threonine kinase 409 671 IPR001245 GO:0004672|GO:0006468
Vimu3g02366 678 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 300 672 - -
Vimu3g02366 678 FunFam Protein NSP-INTERACTING KINASE 2 376 483 - -
Vimu3g02366 678 Gene3D Transferase(Phosphotransferase) domain 1 484 677 - -
Vimu3g02366 678 Coils Coil 677 678 - -
Vimu3g02366 678 Gene3D Ribonuclease Inhibitor 26 139 IPR032675 -
Vimu3g02366 678 Pfam Leucine rich repeat 165 224 IPR001611 GO:0005515
Vimu3g02366 678 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Vimu3g02366 678 SUPERFAMILY L domain-like 27 234 - -
Vimu3g02366 678 FunFam Protein NSP-INTERACTING KINASE 2 484 675 - -
Vimu3g02366 678 FunFam Protein NSP-INTERACTING KINASE 2 137 259 - -
Vimu3g02366 678 FunFam Leucine-rich repeat receptor-like kinase 26 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02366 Vimu-Chr3 38118139 38120881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02366 8 518 Miscellaneous Gene Families AT4G22730 55.238 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Vimu3g02366 PK_Tyr_Ser-Thr 4.6e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02366 - - gmx:100775422 1209.9