Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02358 ATGACAGCAATGGGTTCAATCGAGAATCAAGAAGCCATTGATCTCTTTGAAGGTCAGAATATTTTGTACATGCAGATATTTGGCCACCTTAAACCTTTGTGTCTTAAGTGGGCTGTCCAACTAGGTATTCCAGACATAATACACAACCATGGAAAACCTATTACTCTTTCTCACTTGGTCTCAACCCTTCAAATTCCACCCTCTAAGACTGCTTTTGTCCAGCGGTTAATGCACTTTTTGGCACACAATGAAATCTTTGATATCCACCATAGCCAAGAAGATCATGAAGTAGCTTATGCCCTAACCTCAGCATCCAAACTTCTTGTCAATGGCAGTGGCCATTGTTTATCTCCAATGGTTCGGTTCATCACTGATCCACTTGTCATGAGTAAATACCACCACCTGAGAGAATGGATTTACGGGGAGGACCCCACCACACTCTATGAGACAGCCATAGGGACAAGCTTTTGGGGACTTCTTGACAGAGAACCTAAATACTTGAGTCTCTTCAATGAGGGCATGGCAAGTGATTCCCAAATGGTGGAGTTGGCTCTCAAAAATTGTAATTCAGTTTTTGAGAATCTAGATTCCATGGTGGACGTAGGTGGTGGAACAGGAACCACAGCCAGAATTATCAGCCAGGCATATCCTAAGCTAAAATGTGTTGTGCTTGACCTTCCTAAGGTTATAGCAAACACCACAGGAACCAACAATTTAAGCTTTGTTGGTGGTGACATGTTCAAATCTATCCCTCAAGCTGATGCAATCCTACTGAAGTGGGTTTTGCATGATTGGGATGATGAAGATTGCGTTAAGATTTTGAAAAACTGTAGAGGAGCTATTTCGAGCAAAGGAAATAAAGGGAAAGTGATTGTCATAGAAACTGTAATAAATGAAAAGCTTGATTACAAAGATGTGACTCAAACAAAGCTCAGTTGGGATATGACAATGTTGGCCATTAATGGAAAAGAGCGAACTGAAGAAGAATGGAAAAAACTGTTCACTGAAGCAGGATTCAAATACCACAAAATATTTCCTATTTTTGGATTTAGATCTCTCATCGAGGTTTATCCATAG 1077 0.4058 MTAMGSIENQEAIDLFEGQNILYMQIFGHLKPLCLKWAVQLGIPDIIHNHGKPITLSHLVSTLQIPPSKTAFVQRLMHFLAHNEIFDIHHSQEDHEVAYALTSASKLLVNGSGHCLSPMVRFITDPLVMSKYHHLREWIYGEDPTTLYETAIGTSFWGLLDREPKYLSLFNEGMASDSQMVELALKNCNSVFENLDSMVDVGGGTGTTARIISQAYPKLKCVVLDLPKVIANTTGTNNLSFVGGDMFKSIPQADAILLKWVLHDWDDEDCVKILKNCRGAISSKGNKGKVIVIETVINEKLDYKDVTQTKLSWDMTMLAINGKERTEEEWKKLFTEAGFKYHKIFPIFGFRSLIEVYP 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02358 358 PIRSF O-mtase 1 358 IPR016461 GO:0008168
Vimu3g02358 358 FunFam O-methyltransferase ZRP4 110 358 - -
Vimu3g02358 358 CDD AdoMet_MTases 199 297 - -
Vimu3g02358 358 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 23 358 IPR016461 GO:0008168
Vimu3g02358 358 Gene3D - 4 108 IPR036388 -
Vimu3g02358 358 PANTHER O-METHYLTRANSFERASE 27 341 IPR016461 GO:0008168
Vimu3g02358 358 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 113 357 IPR029063 -
Vimu3g02358 358 Gene3D Vaccinia Virus protein VP39 110 358 IPR029063 -
Vimu3g02358 358 SUPERFAMILY "Winged helix" DNA-binding domain 15 112 IPR036390 -
Vimu3g02358 358 Pfam O-methyltransferase domain 132 340 IPR001077 GO:0008171
Vimu3g02358 358 FunFam Coniferyl alcohol 9-O-methyltransferase 5 108 - -
Vimu3g02358 358 Pfam Dimerisation domain 34 81 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02358 Vimu-Chr3 38054491 38056259 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02358 32 344 Monolignol Biosynthesis Gene Families AT5G54160 33.750 5.25e-52 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02358 K22588 - gmx:100819853 553.132