Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02355 ATGCTTGTAAGACACTATATAAGCCAACCCAATGCTATTCTTGGAAACATAAACCAAAGCAGATTCATAGATTCATTAAGTAAACATTCTTGCATGGCAGCAATGGGTTCAATCGAGAATCAAGAAGCCATTGATCTCTTTGAAGGCCAGAATATTTTGTACATGCAGATATTTGGCCACCTTAAACCTTTGTGTCTTAAGTGGGCTGTCCAACTAGGTATTCCAGACATAATACACAACCATGGAAAACCTATTACTCTTTCTCACTTGGTCTCAACCCTTCAAATTCCACCCTCTAAGACTGCTTTTGTCCAGCGGTTAATGCACTTTTTGGCACACAATGAAATTTTTGATATCCACCATAGTCAAGAAGATCATGAAGTAGCTTATGCCCTAACCCCAGCATCCAAACTTCTTGTGAATGGCAGTGGCCATTGTTTATCTCCAATGGTTCGGTTGATCACTGATCCACTTCTCATGAGTAAATACCACCACCTGGGAGAATGGATTTACGGAAAGGACCCCACCACACTGTATGAGACAGCCATAGGGACAAGTATCTGGGGACTTCTTGACAGAGAACCTAAATACTTGAGTCTTTTCAGCGAGGGCATGGCAAGTGATTCCCAAATGGTGGACTTGGCTCTCAAAAATTGCAATTCAGTTTTTGAGAATCTAGATTCCATCGTGGACGTAGGTGGTGGAACAGGAACCACAGCCAGAATTATCAGCCAGGCATATCCTAAGCTGAAATGTGTTGTGCTTGACCTTCCTCATGTTATAGCAAACTCCACAGGAACCAACAATTTAAGCTTTCTTGGTGGTGACATGTTCAAATCTATCCCTCAAGCTGATGCAATCTTACTGAAGTGGGTTTTGCATGATTGGAATGACGAAGATTGCGTTAAGATTTTGAAAAACTGTAGAGGAGCTATTTCGAGCAAAGGCAATAAAGGGAAAGTGATTGTCATAGAAACAGTAATAAATGAAAAGCTTGATTACAAAGATGTGACTCAAACAAAGCTTAGTTTGGATATGACAATGTTGGCCATTAATGGAAAAGAGCGAACTGAAGAAGAATGGAAAAAACTGTTCACTGAAGCAGGATTCAAATACCACAAAATATTTCCTATTTTTGGATTTAGATCTCTCATCGAGGTTTATCCATAG 1170 0.4009 MLVRHYISQPNAILGNINQSRFIDSLSKHSCMAAMGSIENQEAIDLFEGQNILYMQIFGHLKPLCLKWAVQLGIPDIIHNHGKPITLSHLVSTLQIPPSKTAFVQRLMHFLAHNEIFDIHHSQEDHEVAYALTPASKLLVNGSGHCLSPMVRLITDPLLMSKYHHLGEWIYGKDPTTLYETAIGTSIWGLLDREPKYLSLFSEGMASDSQMVDLALKNCNSVFENLDSIVDVGGGTGTTARIISQAYPKLKCVVLDLPHVIANSTGTNNLSFLGGDMFKSIPQADAILLKWVLHDWNDEDCVKILKNCRGAISSKGNKGKVIVIETVINEKLDYKDVTQTKLSLDMTMLAINGKERTEEEWKKLFTEAGFKYHKIFPIFGFRSLIEVYP 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02355 389 Gene3D - 35 139 IPR036388 -
Vimu3g02355 389 PIRSF O-mtase 31 389 IPR016461 GO:0008168
Vimu3g02355 389 Gene3D Vaccinia Virus protein VP39 141 389 IPR029063 -
Vimu3g02355 389 CDD AdoMet_MTases 229 328 - -
Vimu3g02355 389 PANTHER O-METHYLTRANSFERASE 53 372 IPR016461 GO:0008168
Vimu3g02355 389 Pfam Dimerisation domain 65 112 IPR012967 GO:0046983
Vimu3g02355 389 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 144 388 IPR029063 -
Vimu3g02355 389 FunFam O-methyltransferase ZRP4 141 389 - -
Vimu3g02355 389 SUPERFAMILY "Winged helix" DNA-binding domain 46 143 IPR036390 -
Vimu3g02355 389 Pfam O-methyltransferase domain 163 371 IPR001077 GO:0008171
Vimu3g02355 389 FunFam Coniferyl alcohol 9-O-methyltransferase 36 139 - -
Vimu3g02355 389 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 54 389 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02355 Vimu-Chr3 38026150 38027428 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02355 63 375 Monolignol Biosynthesis Gene Families AT5G54160 34.062 1.39e-53 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02355 K22588 - gmx:100819853 561.607