Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02350 ATGATACTTGAGCCTGCCACTGGTGATTGCTACGGAGTTTTAGCGAACAATAACTCTTCAGGCTCGAAGTATCCATCCGAAGAAAACCTCCTACAGTGCTTAAGATATTTATACGACTCTTTGCTTCATCCACAGATGATGGTAAACTATGTTGAAGCAGGGACGAGGACTCTCGCGATGAGCTCAGTTCAGAAGCTTTTTGACTGCAAGCAGTTTGTGAAAGATTATAGTCCCGAGTTGTTACCATTGTCAGATTTGCACAAATTACGCATCTCATGTCAGGTTGAAATCGTAGATGAATCTGAAGATCCAGAAGGCATAGCTCCAACGGAATTAATTGTGCTGCCCATGAACGCCACAGTGGCCGAGCTTAAAAGTCAAGCAGCGATTGCTTTTCAAGATGTATATCTAATGTTTAGAAGATTTCAAGTTGATGAGATAGTAGGCTATAGCGGTGTTGAAGATTCCACCCAGGTCAAGCTCCTGTTAGGATCGAAAGATGTAGTATGTGTTCGAGGAAGATGCATTGGGAAAAATGGGTTAAGTAAGTTCCGGATGGAACGTGGACTTGAGAGGTGGACTGTAGATTGCAGCTGTGGGGCCAAGGATGACGATGGGGAGAGAATGTTGGCGTGCGATATATGTGGAGTGTGGCGGCACACTAGGTGTTCTGACATCCATGATACTGATCCCGTTCCAGCACGTTTTGTTTGCCTCAAATGCCAAAACAATGAATCAAAACTCAAATCTGGTGGCCACTGCAAAGATGAGACTGTCACCAACGTTACCACTCCCACTAGTTGTTTCGGAAAAACCTTCCCAGTGCCATCTGATGTCAGTTAG 843 0.4472 MILEPATGDCYGVLANNNSSGSKYPSEENLLQCLRYLYDSLLHPQMMVNYVEAGTRTLAMSSVQKLFDCKQFVKDYSPELLPLSDLHKLRISCQVEIVDESEDPEGIAPTELIVLPMNATVAELKSQAAIAFQDVYLMFRRFQVDEIVGYSGVEDSTQVKLLLGSKDVVCVRGRCIGKNGLSKFRMERGLERWTVDCSCGAKDDDGERMLACDICGVWRHTRCSDIHDTDPVPARFVCLKCQNNESKLKSGGHCKDETVTNVTTPTSCFGKTFPVPSDVS 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02350 280 Pfam PHD-finger 197 243 IPR019787 -
Vimu3g02350 280 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 248 IPR013083 -
Vimu3g02350 280 SMART PHD_3 196 242 IPR001965 -
Vimu3g02350 280 CDD PHD_MMD1_like 196 241 - -
Vimu3g02350 280 SUPERFAMILY FYVE/PHD zinc finger 185 244 IPR011011 -
Vimu3g02350 280 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 22 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02350 Vimu-Chr3 38000705 38001800 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02350 3 241 PHD Transcription Factor Family AT5G22260 28.125 4.10e-21 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vimu3g02350 PHD 3e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02350 K26271 - gmx:100818189 484.952