Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02346 ATGGAGTCAAACAATTTACATGCTGATCAAAGGGCAGACAAAAAGATAATAATAAGATACACGGAATGTCTGAAGAACCATGCAGCTTCAATTGGTGGCAATGCAACTGATGGTTGTGGCGAGTTCATTGCTGATGGAGAAGAAGGCACGCTTGAGGCTCTCAGATGCTCGGCTTGTAACTGCCACAGAAACTTCCACAGAAAAGTGTCTGATGAGAAGGACTGTGAAAACGGGATGAGAAAGGAGGTGGGAAATAATGCAACTGAAAAGGTGAAGAAGAGGTTTAGAACCAAGTTCACACAAGAACAAAAGGAGAAGATGTTTCTTTTTGCAGAAAGAGCAGGGTGGAGGATACAGAAGCTAGATGAATCTGTGGTGCAAAATTTTTGCCAGGAGATTGGAATCAAAAGAAGAGTCCTCAAAGTGTGGATTCACAATAACAAGAACACTTTTGCCAAGAGAAATCCCTCCACTAGCTAG 480 0.4229 MESNNLHADQRADKKIIIRYTECLKNHAASIGGNATDGCGEFIADGEEGTLEALRCSACNCHRNFHRKVSDEKDCENGMRKEVGNNATEKVKKRFRTKFTQEQKEKMFLFAERAGWRIQKLDESVVQNFCQEIGIKRRVLKVWIHNNKNTFAKRNPSTS 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02346 159 NCBIfam homeobox domain, ZF-HD class 92 149 IPR006455 -
Vimu3g02346 159 Gene3D - 77 153 - -
Vimu3g02346 159 FunFam Zinc-finger homeodomain protein 2 79 153 - -
Vimu3g02346 159 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 12 150 - -
Vimu3g02346 159 SUPERFAMILY Homeodomain-like 86 153 IPR009057 -
Vimu3g02346 159 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 19 68 IPR006456 -
Vimu3g02346 159 Pfam ZF-HD protein dimerisation region 18 70 IPR006456 -
Vimu3g02346 159 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 20 69 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02346 Vimu-Chr3 37991692 37992291 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02346 11 154 ZF-HD Transcription Factor Family AT2G02540 43.961 4.02e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vimu3g02346 ZF-HD_dimer 1.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02346 - - gmx:100793926 257.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02346 3 37991692 37992291 Vimu3g02346 3 37991692 37992291 ECH